Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10n01
         (385 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22440.1 68414.m02805 alcohol dehydrogenase, putative similar...    27   5.7  
At4g30080.1 68417.m04278 transcriptional factor B3 family protei...    26   7.5  
At4g07510.1 68417.m01165 hypothetical protein                          26   9.9  
At3g43450.1 68416.m04606 hypothetical protein                          26   9.9  
At2g23920.1 68415.m02856 hypothetical protein                          26   9.9  

>At1g22440.1 68414.m02805 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
           esculentum]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 386

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 46  ERCANCANPTALWCTRKT 99
           E C  C +P + WCT+ T
Sbjct: 105 EECKECISPKSNWCTKYT 122


>At4g30080.1 68417.m04278 transcriptional factor B3 family protein
           contains Pfam profile: PF02362 B3 DNA binding domain
          Length = 670

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 36  LSEREVRELRKSNCTLVYTKNEAAQQVLLENNFTAIN 146
           L E E   LR+SNC+L   K +   + ++E    AI+
Sbjct: 249 LREDESNSLRRSNCSLADRKGKVTAESVIEAATLAIS 285


>At4g07510.1 68417.m01165 hypothetical protein 
          Length = 312

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 64  ANPTALWCTRKTRQLSKFYWKITLPLLML 150
           + P  LW  + TR   KF WK  L LL+L
Sbjct: 195 SQPHTLWTRKFTRTREKFNWK-DLSLLVL 222


>At3g43450.1 68416.m04606 hypothetical protein
          Length = 222

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 31  GRCPNERCANCANPTALW 84
           GRC  ERC +  NPTA++
Sbjct: 79  GRCFFERCLHYENPTAVY 96


>At2g23920.1 68415.m02856 hypothetical protein 
          Length = 56

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 247 ILYVNK*YINRLFLF 203
           + Y+N+ YINRLF+F
Sbjct: 34  MFYINQFYINRLFIF 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,009,932
Number of Sequences: 28952
Number of extensions: 118571
Number of successful extensions: 249
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)