Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m23
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    28   0.084
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   4.2  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   7.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 27.9 bits (59), Expect = 0.084
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 510  PLQTTSVLLRPSSFRSAEMSNV--LSPSRWTPPIPPVTK 400
            P Q+T+ +   +S+     +N     P+ W PPIPP ++
Sbjct: 1345 PAQSTTSVSTTTSWNPGSTTNYPEWQPTEWHPPIPPTSE 1383


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 105 VWLWPFAN*FI*TSKRTWKRLWKW 176
           +W+  F N  +  +  TW+ L++W
Sbjct: 144 LWISFFLNFMLHCNNTTWRCLYRW 167


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 596 EFPAFYTVRSGHRAPYSVADAKHAARIL 679
           E P FY  R    APY   +A   A +L
Sbjct: 30  EPPLFYEERPDFVAPYIKVEADEEAPVL 57


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 182 YSPLPEPFPSSLRCLNKLVCKRP 114
           Y  LP+   S  R LN L+ K+P
Sbjct: 398 YLALPKTDSSDNRILNNLLDKKP 420


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 182 YSPLPEPFPSSLRCLNKLVCKRP 114
           Y  LP+   S  R LN L+ K+P
Sbjct: 290 YLALPKTDSSDNRILNNLLDKKP 312


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 572 VCSFGESNEFPAFYTVRSGHRAPYSVAD 655
           VCS    NE  A ++ +     PY +AD
Sbjct: 113 VCSSESFNEDIAVFSKQIRQEKPYYIAD 140


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,323
Number of Sequences: 336
Number of extensions: 3722
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)