Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10m23
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 180 2e-46
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 30 0.36
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 28 1.5
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 27 1.9
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 27 2.6
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 3.4
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 26 4.5
SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces po... 25 7.8
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 180 bits (438), Expect = 2e-46
Identities = 94/178 (52%), Positives = 128/178 (71%), Gaps = 2/178 (1%)
Frame = +2
Query: 152 NLETALEVENIIRQRGAVPATVAILKGQLTVGLTEDQLRYLAQA-KGVIKASRRDLAYIA 328
N E A++VE+ +R GAVPAT+A+L GQ T+GL + QL LA++ + K SRRDL+Y+A
Sbjct: 74 NEELAIQVESKVRSMGAVPATIALLNGQCTIGLEQFQLSELAKSGETAYKVSRRDLSYVA 133
Query: 329 AAKLDGATTVAGTIIASELADIPVFVTGGIGGVHREGESTLDISADLNELGRSKTLVVCS 508
+ +L+G TTVA T+I + A I VF TGGIGGVHR E+++DISADL ELGR++ VV +
Sbjct: 134 SQRLNGGTTVAATMILARAAGIDVFATGGIGGVHRGAENSMDISADLIELGRTRVAVVSA 193
Query: 509 GIKSILDIGRTLEYLETQGVCVCSFG-ESNEFPAFYTVRSGHRAPYSVADAKHAARIL 679
G+KSILDIGRTLE LETQGV V + G + FPAF++ S ++P S+ + A +L
Sbjct: 194 GVKSILDIGRTLEVLETQGVPVVTLGPPKSAFPAFFSRESKFQSPLSLETPQLIANML 251
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 29.9 bits (64), Expect = 0.36
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = -1
Query: 609 NAGNSLDSPNEHTQTPCVSKYSRVLPMSSIDLI----PLQTTSVLLRPSSFRSAEMSNVL 442
+ G+S+ SP+ +S+Y P SS + L +SV+L P F + +N
Sbjct: 70 SVGSSIASPSSRIPDKAISQYYETSPPSSTSSLSSNNQLMNSSVILSPGQFLPDD-ANAY 128
Query: 441 SPSRWTPP 418
P PP
Sbjct: 129 GPKASLPP 136
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -3
Query: 217 HSRWNGTPLPNYILHFQSRFQVRFDV*IN*FAKGHSQTYLETVLLTLYFLYNNLKTEY 44
+S+W +PN++ S V F + GH Q + L +Y + N LK +Y
Sbjct: 149 YSKWWSRRIPNFVDRNASLIMVLFQPALLLIDHGHFQYNCVMLGLVMYAIANLLKNQY 206
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +2
Query: 263 LRYLAQAKGVIKASRRDLAYIAAAKLDGATTV-AGTIIASELADIPV--FVTGGIGGVHR 433
LR ++ + A+ +L++I + +D + A + +E+ I + G GVH
Sbjct: 130 LRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDDGVHP 189
Query: 434 EGESTLDISADLNELGRSKTLVVC 505
TL+I+ +N+L + K+ C
Sbjct: 190 TAGQTLNIAPTMNDLNKKKSSSQC 213
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 302 SRRDLAYIAAAKLDGATTVAGTIIASE 382
SR LAY+A+ + A+ +AG I+A E
Sbjct: 468 SREALAYLASPAVVAASAIAGKIVAPE 494
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 170 PEPFPSSLRCLNKLVCKRPQPNLLRNCIIDTVFSVQ-*FKNGILLLPYGCLV 18
PEP PSS L V KR + L++ +D F ++ F G L + GCLV
Sbjct: 56 PEPSPSSPFGLFAYVVKRSETYLIQYAGVDGYFFIRYLFTFGALCI-LGCLV 106
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 412 TGHEDWYVS*F*SDNRSSDGCGTVKLSRSYISKITSR 302
+ H D V + SDG G +K S+ Y S+IT+R
Sbjct: 434 SSHRDTDVVLLSGRHSDSDGNGALKRSKIYASEITAR 470
>SPAC750.08c |||NAD-dependent malic enzyme|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 228
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = -1
Query: 516 LIPLQTTSVLLRPSSFRSAEMSNVLSPSRWTPPIPPVTKTG----MSASSEAIIVPA 358
+ P+ + L+ + E SN + P+PP+T+ G +S + A++ PA
Sbjct: 77 IFPISNPTTLMEAKPVQIDEWSNGKALMATGSPLPPLTRNGKEYVISQCNNALLYPA 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,725
Number of Sequences: 5004
Number of extensions: 62738
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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