Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m23
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1174 - 24922247-24922286,24922590-24922672,24922971-249230...    86   3e-17
06_03_0628 - 22909954-22910421                                         30   1.5  
10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679...    28   6.2  
06_03_0598 + 22621765-22624795,22624903-22625066,22625290-226253...    28   8.1  
06_02_0239 + 13384451-13387124,13387234-13387631                       28   8.1  
05_02_0054 - 6175324-6175905                                           28   8.1  
01_05_0510 - 22816607-22816916,22817005-22817177,22817341-228176...    28   8.1  

>08_02_1174 -
           24922247-24922286,24922590-24922672,24922971-24923082,
           24923495-24923615,24924015-24924060,24924348-24924425,
           24925261-24925365
          Length = 194

 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 41/78 (52%), Positives = 58/78 (74%)
 Frame = +2

Query: 449 LDISADLNELGRSKTLVVCSGIKSILDIGRTLEYLETQGVCVCSFGESNEFPAFYTVRSG 628
           +DIS+DL ELG++   V+ +G+KSILDI RTLEYLETQGV V ++ ++NEFPAF+T  SG
Sbjct: 1   MDISSDLTELGKTPVTVISAGVKSILDIPRTLEYLETQGVTVAAY-KTNEFPAFFTEVSG 59

Query: 629 HRAPYSVADAKHAARILH 682
            + P  V   +  A+I++
Sbjct: 60  CKVPCRVDSPEECAKIIY 77


>06_03_0628 - 22909954-22910421
          Length = 155

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -3

Query: 673 PSGVLRVGNAIRSPVTGTDRVKCWKLVRLAKRTHTDALRFQIFESSSYV 527
           P+G+ RVG  +R  +      K W    LAKR +  A   Q +ES   V
Sbjct: 75  PAGLGRVGAEVRGAIQKARVAKGWSQAELAKRINERAQVVQEYESGKAV 123


>10_08_0154 +
           15266430-15266953,15267748-15267820,15267893-15267949,
           15268248-15268303,15269584-15269797,15270497-15270538,
           15270661-15270735,15270820-15270903,15271880-15271944,
           15272436-15272655,15272820-15272908,15273326-15273440,
           15273519-15273554
          Length = 549

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
 Frame = +2

Query: 101 VSLAVAFCKLIYLNIEANLETALEVENIIRQR---GAVPATVA--ILKGQLTVGLTEDQL 265
           V +A+A    + L  +  ++ +   +N+++     G + +  A  +  G L   +TEDQL
Sbjct: 247 VPMAIALTGQVLLGQQVMVKPSEAEKNLVQSNVASGGIASGGARKLYVGNLHSNITEDQL 306

Query: 266 RYLAQAKGVIKASRRDLAYI----AAAKLDGATTVAGTII 373
           R + +  G ++  +   A +    AA  L+G   +AG +I
Sbjct: 307 RQVFEPFGQVELVQLPFARLEDAKAAQSLNGQLDIAGRVI 346


>06_03_0598 + 22621765-22624795,22624903-22625066,22625290-22625328,
            22625479-22625487
          Length = 1080

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 431  REGESTLDISADLNELGRSKTLVVCSGIKSILDIGRTLEYLETQ 562
            R G     +    +EL + K L +C  +   LD+   L+YL  Q
Sbjct: 907  RNGNLDTWLHPKAHELSQRKALNICQRVNIALDVAFALDYLHNQ 950


>06_02_0239 + 13384451-13387124,13387234-13387631
          Length = 1023

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 197 GAVPATVAILKGQLTVGLTEDQLRYLAQAKGVIKASRRDLAYIAAAKLDG 346
           G +P T+  LKG  T+ L+ +QL  +  A  ++K     L  ++   LDG
Sbjct: 560 GVIPGTIGNLKGLQTLDLSSNQLSGIIPAT-LVKMQALRLLNLSMNDLDG 608


>05_02_0054 - 6175324-6175905
          Length = 193

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 299 ASRRDLAYIAAAKLDGATTVAGTIIASELAD-IPVFVTGGIGGVHREGESTL 451
           +S   L +I+ AK  GAT +A      ELAD     V  G+GG +R   + L
Sbjct: 21  SSSSPLDFISRAKARGATALAERRPWRELADPRAASVPRGLGGAYRRARANL 72


>01_05_0510 -
           22816607-22816916,22817005-22817177,22817341-22817607,
           22817951-22818393,22818474-22818635,22820991-22821414,
           22823177-22823227
          Length = 609

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 492 VLLRPSSFRSAEMSNVLSPSRWTPPIPPVTKTGM 391
           VLL+   F+S  + +++   RW+P +P    T M
Sbjct: 349 VLLQQEPFKSTTVRSIVESYRWSPFVPITLDTSM 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,357,627
Number of Sequences: 37544
Number of extensions: 436681
Number of successful extensions: 1379
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)