Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10m23
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45511| Best HMM Match : Indigoidine_A (HMM E-Value=1.5e-18) 115 4e-26
SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_18146| Best HMM Match : Pkinase (HMM E-Value=0) 29 2.7
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 29 3.6
SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_34917| Best HMM Match : zf-C2H2 (HMM E-Value=3.9e-37) 29 3.6
SB_22736| Best HMM Match : F5_F8_type_C (HMM E-Value=6.4e-24) 29 4.8
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_45511| Best HMM Match : Indigoidine_A (HMM E-Value=1.5e-18)
Length = 176
Score = 115 bits (276), Expect = 4e-26
Identities = 57/95 (60%), Positives = 73/95 (76%), Gaps = 1/95 (1%)
Frame = +2
Query: 152 NLETALEVENIIRQRGAVPATVAILKGQLTVGLTEDQLRYLAQA-KGVIKASRRDLAYIA 328
NL+ A +V ++R GAVPAT+AIL GQ+ VGLT+D+L+ LAQA + +K SRRDL Y+
Sbjct: 77 NLKMARDVCGVVRDNGAVPATIAILDGQIHVGLTDDKLKKLAQAGQNAVKTSRRDLPYVL 136
Query: 329 AAKLDGATTVAGTIIASELADIPVFVTGGIGGVHR 433
+ L G TTV+GT+IA+ A IPVFVTGGIGGVHR
Sbjct: 137 SKGLMGGTTVSGTMIAAHKAGIPVFVTGGIGGVHR 171
>SB_49131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1163
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 103 KFGCGLLQTNLFKHRSELGNGSGSGEYN*ATGCRSSDCGNS*RAIDRWSDG 255
KF C +L + F+++S N + +N T C + CGN+ I + G
Sbjct: 101 KFDCEVLDGDRFRNQSNYRNSTTHHHFNLFTECERAPCGNNGICIPNYESG 151
>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1845
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +2
Query: 278 QAKGVIKASRRDLAYIAAAKLDGATTVAGTIIASELADIPVFVTGGIGGVHREGESTLDI 457
Q G++ R + +AA K+ T A ++ L D+ I VHR G+STL++
Sbjct: 698 QRHGILDLQRSSVMGVAAHKVIPPTESADPLLKHGLVDLTSVNVTEIPEVHRTGQSTLEV 757
Query: 458 SADLNEL 478
+ +L
Sbjct: 758 LSPKRQL 764
>SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1138
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 468 RSAEMSNVLSPSRWTPPIPPVTKTGMSASSEAII 367
RSAE++N+L S P + + KTG SA +A I
Sbjct: 556 RSAELANMLFESEMIPHLVGLVKTGFSADFKAKI 589
>SB_18146| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 888
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 468 RSAEMSNVLSPSRWTPPIPPVTKTGMSASSEAII 367
RSAE++N+L S P + + KTG SA +A I
Sbjct: 556 RSAELANMLFESEMIPHLVGLVKTGFSADFKAKI 589
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 29.1 bits (62), Expect = 3.6
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Frame = -1
Query: 582 NEHTQTPCVSKYSRVLPMSSIDLIPLQTT----SVLLRPSSFRSAEMSNVLSPSRWTPPI 415
N + TP VS P + + P + S+L RPSS E V SPS
Sbjct: 409 NRESLTPAVSPGGEREPRARVKSAPSDSQHKQPSILTRPSSAAQRETRTVGSPS------ 462
Query: 414 PPVTKTGMSASSEAIIVPA 358
P TKT +S S A PA
Sbjct: 463 -PSTKTEISDSRRAWPAPA 480
>SB_48675| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1329
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = -1
Query: 588 SPNEHTQTPCVSKYSRVLPMSSIDLIPLQTTSVLLRPSSFRSAEMSNVLSPSRWTPP 418
S E + C + + ++ L P +TTS+L + + A +++SP++ T P
Sbjct: 182 SDTEIFRLTCGHTFQDISLQTNNQLCPFRTTSILEKGKTLSDAFNKSIISPTKMTDP 238
>SB_34917| Best HMM Match : zf-C2H2 (HMM E-Value=3.9e-37)
Length = 288
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 413 GIGGVHREGESTLDISADLNELGRSKTLVVCSGIKS 520
GI HR ++T + D+ SKTLV C+G+ S
Sbjct: 89 GIEETHRT-QNTYPVKEDIKSSPTSKTLVACTGVPS 123
>SB_22736| Best HMM Match : F5_F8_type_C (HMM E-Value=6.4e-24)
Length = 1039
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 127 FAKGHSQTYLETVLLTLYFLYNNLKTEYYCCRM 29
F K + Y+E ++T+ F Y +L+ E Y CR+
Sbjct: 336 FRKNVTTRYVELTVVTVLFDYPSLRMELYGCRV 368
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 480 PSSFRSAEMSNVLSPSRWTPPIPPVTKT 397
PSS ++AEM+ V SP+ T P+ T T
Sbjct: 175 PSSAQAAEMATVSSPTTTTTPLYDTTAT 202
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,200,725
Number of Sequences: 59808
Number of extensions: 469608
Number of successful extensions: 1209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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