Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m23
         (696 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC025760-1|AAH25760.1|  291|Homo sapiens stomatin (EPB72)-like 3...    32   1.7  
AL445590-1|CAI40973.1|  291|Homo sapiens stomatin (EPB72)-like 3...    32   1.7  

>BC025760-1|AAH25760.1|  291|Homo sapiens stomatin (EPB72)-like 3
           protein.
          Length = 291

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 45/185 (24%), Positives = 70/185 (37%), Gaps = 9/185 (4%)
 Frame = +2

Query: 101 VSLAVAFCKLIYLNIEANLETALEVENIIRQR--GAVPATVAILK-GQLTVGLTEDQLRY 271
           V L    C +    I        +V+ ++  R   AV A   +    Q T  L +  LR 
Sbjct: 91  VDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRN 150

Query: 272 L--AQAKGVIKASRRDLAYIAAAKLDGATTVAGTIIAS-ELAD--IPVFVTGGIGG-VHR 433
           +   Q    I A R ++A+     LD AT + G  +A  E+ D  IPV +   +      
Sbjct: 151 VLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEA 210

Query: 434 EGESTLDISADLNELGRSKTLVVCSGIKSILDIGRTLEYLETQGVCVCSFGESNEFPAFY 613
             E+   + A   E+  SK+L   S + +   I   L YL+T          +  FP   
Sbjct: 211 TREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTVATEKNSTIVFPLPM 270

Query: 614 TVRSG 628
            +  G
Sbjct: 271 NILEG 275


>AL445590-1|CAI40973.1|  291|Homo sapiens stomatin (EPB72)-like 3
           protein.
          Length = 291

 Score = 32.3 bits (70), Expect = 1.7
 Identities = 45/185 (24%), Positives = 70/185 (37%), Gaps = 9/185 (4%)
 Frame = +2

Query: 101 VSLAVAFCKLIYLNIEANLETALEVENIIRQR--GAVPATVAILK-GQLTVGLTEDQLRY 271
           V L    C +    I        +V+ ++  R   AV A   +    Q T  L +  LR 
Sbjct: 91  VDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRN 150

Query: 272 L--AQAKGVIKASRRDLAYIAAAKLDGATTVAGTIIAS-ELAD--IPVFVTGGIGG-VHR 433
           +   Q    I A R ++A+     LD AT + G  +A  E+ D  IPV +   +      
Sbjct: 151 VLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEA 210

Query: 434 EGESTLDISADLNELGRSKTLVVCSGIKSILDIGRTLEYLETQGVCVCSFGESNEFPAFY 613
             E+   + A   E+  SK+L   S + +   I   L YL+T          +  FP   
Sbjct: 211 TREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTVATEKNSTIVFPLPM 270

Query: 614 TVRSG 628
            +  G
Sbjct: 271 NILEG 275


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,338,397
Number of Sequences: 237096
Number of extensions: 2223075
Number of successful extensions: 5430
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5404
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)