Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10m23
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41037-2|AAA82388.3| 651|Caenorhabditis elegans Hypothetical pr... 160 8e-40
AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical... 30 1.8
U61953-17|AAK82912.1| 278|Caenorhabditis elegans Hypothetical p... 28 5.5
AF292053-1|AAG41149.1| 278|Caenorhabditis elegans 4F223 protein. 28 5.5
AY357729-1|AAQ84518.1| 329|Caenorhabditis elegans two-pore K+ c... 28 7.3
AF083652-1|AAC32863.1| 329|Caenorhabditis elegans putative pota... 28 7.3
AF025454-3|AAC71151.2| 329|Caenorhabditis elegans Suppressor pr... 28 7.3
AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore... 27 9.7
AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore... 27 9.7
>U41037-2|AAA82388.3| 651|Caenorhabditis elegans Hypothetical
protein T24C12.3 protein.
Length = 651
Score = 160 bits (389), Expect = 8e-40
Identities = 79/179 (44%), Positives = 110/179 (61%)
Frame = +2
Query: 152 NLETALEVENIIRQRGAVPATVAILKGQLTVGLTEDQLRYLAQAKGVIKASRRDLAYIAA 331
NL TA +E +R G+ PAT+A+ G++ VGL +++L LA ++ +K S RD+A
Sbjct: 49 NLSTARSLEQKVRSSGSHPATIALFDGKIHVGLDDEKLELLASSQNAVKVSSRDIAKTLI 108
Query: 332 AKLDGATTVAGTIIASELADIPVFVTGGIGGVHREGESTLDISADLNELGRSKTLVVCSG 511
K G TTVA T+ + A I VF TGGIGGVHR + T D+SADL EL ++ VVCSG
Sbjct: 109 KKEVGGTTVASTMKIAHAAGISVFATGGIGGVHRGADQTFDVSADLQELSQTPVCVVCSG 168
Query: 512 IKSILDIGRTLEYLETQGVCVCSFGESNEFPAFYTVRSGHRAPYSVADAKHAARILHES 688
+KSILDI +T+EYLET V +G+ N FP+F+T S +A + + +L S
Sbjct: 169 VKSILDIPKTVEYLETHSVNCIVYGQENVFPSFFTRTSDRKAQFCTESLEEVVHLLKTS 227
>AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical
protein Y73B3A.5 protein.
Length = 310
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -1
Query: 591 DSPNEHTQTPCVSKYSRVLPMSSIDLIPLQTTSVLLRPS-SFRSAEMSNVLSPSRWTPPI 415
DSP H+ + S P SS+ +TS + S R +S+ +PS PP
Sbjct: 118 DSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSSSTTPSTTAPPQ 177
Query: 414 PPVTKTGM 391
PP TK GM
Sbjct: 178 PP-TKKGM 184
>U61953-17|AAK82912.1| 278|Caenorhabditis elegans Hypothetical
protein R08C7.12 protein.
Length = 278
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 546 SRVLPMSSIDLIPLQTTSVLLRPSSFRSAEMSNV--LSPSRWTPPIPPVTKT 397
SR + SS ++P T+ + SSF S +M ++ L+ S P PP T T
Sbjct: 2 SRSIDSSSSRMLPSPITNFVTPSSSFSSHQMHDIYSLAASYLQAPPPPYTPT 53
>AF292053-1|AAG41149.1| 278|Caenorhabditis elegans 4F223 protein.
Length = 278
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 546 SRVLPMSSIDLIPLQTTSVLLRPSSFRSAEMSNV--LSPSRWTPPIPPVTKT 397
SR + SS ++P T+ + SSF S +M ++ L+ S P PP T T
Sbjct: 2 SRSIDSSSSRMLPSPITNFVTPSSSFSSHQMHDIYSLAASYLQAPPPPYTPT 53
>AY357729-1|AAQ84518.1| 329|Caenorhabditis elegans two-pore K+
channel protein.
Length = 329
Score = 27.9 bits (59), Expect = 7.3
Identities = 26/89 (29%), Positives = 38/89 (42%)
Frame = +2
Query: 104 SLAVAFCKLIYLNIEANLETALEVENIIRQRGAVPATVAILKGQLTVGLTEDQLRYLAQA 283
+L++ C L YL + A + ALE EN I QR V LK + + + ++
Sbjct: 8 TLSLIVCTLTYLLVGAAVFDALETENEILQRKLVQRVREKLKTKYNMSNADYEILEATIV 67
Query: 284 KGVIKASRRDLAYIAAAKLDGATTVAGTI 370
K V + + A ATTV TI
Sbjct: 68 KSVPHKAGYQWKFSGAFYF--ATTVITTI 94
>AF083652-1|AAC32863.1| 329|Caenorhabditis elegans putative
potassium channel subunitn2P38 protein.
Length = 329
Score = 27.9 bits (59), Expect = 7.3
Identities = 26/89 (29%), Positives = 38/89 (42%)
Frame = +2
Query: 104 SLAVAFCKLIYLNIEANLETALEVENIIRQRGAVPATVAILKGQLTVGLTEDQLRYLAQA 283
+L++ C L YL + A + ALE EN I QR V LK + + + ++
Sbjct: 8 TLSLIVCTLTYLLVGAAVFDALETENEILQRKLVQRVREKLKTKYNMSNADYEILEATIV 67
Query: 284 KGVIKASRRDLAYIAAAKLDGATTVAGTI 370
K V + + A ATTV TI
Sbjct: 68 KSVPHKAGYQWKFSGAFYF--ATTVITTI 94
>AF025454-3|AAC71151.2| 329|Caenorhabditis elegans Suppressor
protein 9 protein.
Length = 329
Score = 27.9 bits (59), Expect = 7.3
Identities = 26/89 (29%), Positives = 38/89 (42%)
Frame = +2
Query: 104 SLAVAFCKLIYLNIEANLETALEVENIIRQRGAVPATVAILKGQLTVGLTEDQLRYLAQA 283
+L++ C L YL + A + ALE EN I QR V LK + + + ++
Sbjct: 8 TLSLIVCTLTYLLVGAAVFDALETENEILQRKLVQRVREKLKTKYNMSNADYEILEATIV 67
Query: 284 KGVIKASRRDLAYIAAAKLDGATTVAGTI 370
K V + + A ATTV TI
Sbjct: 68 KSVPHKAGYQWKFSGAFYF--ATTVITTI 94
>AC087079-14|AAM81101.1| 392|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform b protein.
Length = 392
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 122 CKLIYLNIEANLETALEVENIIRQRGAVPATVAILKGQLTVGLTE 256
CK + +++T +E + +RG +P T ++ L VG E
Sbjct: 240 CKYLQAVFTEHMQTVVERNLEVAERGGIPGTRGLVNAFLKVGTEE 284
>AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform a protein.
Length = 787
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 122 CKLIYLNIEANLETALEVENIIRQRGAVPATVAILKGQLTVGLTE 256
CK + +++T +E + +RG +P T ++ L VG E
Sbjct: 240 CKYLQAVFTEHMQTVVERNLEVAERGGIPGTRGLVNAFLKVGTEE 284
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,354,652
Number of Sequences: 27780
Number of extensions: 356658
Number of successful extensions: 977
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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