Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m23
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.52 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    25   0.69 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   8.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
 Frame = +2

Query: 149  ANLETALEVENIIRQRGAVPATVAILKGQLT-VGLTEDQLRYLAQAKGVIKASRRDLAYI 325
            +N    + VEN++ Q+G   AT A    QL   G    Q +Y  Q     + S      I
Sbjct: 1121 SNSGQLISVENLLAQKGLKLATTASHANQLNRQGKQVIQTQY--QVVSQAQTSSGQSKII 1178

Query: 326  AAAKLDGATTVAGTI--IASELADIPVFVTGG---IG-GVHREGESTLDISADLNELGRS 487
            A+ +    +  A T+  + ++LA  P+ +  G   +G GV   G   L       +  + 
Sbjct: 1179 ASTQQQQQSQQAQTVRMVTAQLAGKPIVLASGNKNVGVGVSNSGSVVLGKQQPSQQQTQQ 1238

Query: 488  KTLVVCSGIKSI 523
            + +++ S + +I
Sbjct: 1239 QPIILPSQLLNI 1250


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 222 IATVAGTAPRCLIIFSTSRAVSKFASMFK*ISLQKAT 112
           I T+   +  C+I F+TS  VSK  S F  + +Q +T
Sbjct: 242 INTLLSISASCVIAFATSALVSK-DSKFNMVHIQNST 277


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 465 SAEMSNVLSPS-RWTPPIPPVTKTGMSASSEAIIV 364
           SA+  N    + R +P  P +T+TG+S+  ++ I+
Sbjct: 320 SAKYRNAFKETCRCSPSNPSITRTGLSSVRDSSII 354


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 543 SNIWKRKASVCVRLASLTSFQ 605
           +++WK KA +   +A L SFQ
Sbjct: 333 TSLWKDKAMIEANVAVLHSFQ 353


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = -1

Query: 498 TSVLLRPSSFRSAEMSNVLSPSRWTPPIPPVTKTG 394
           +++ + P+  +  + S V+  + WT     +T+TG
Sbjct: 471 SNMQISPNELKPNDKSQVIKQNTWTVFRDAITQTG 505


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -3

Query: 256 FRQTNGQLPFKNCHSRWN 203
           F     +LP+ +C++ WN
Sbjct: 89  FMSMRSELPWGSCNNYWN 106


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
          protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 98 RNCIIDTVFSV 66
          RNCI  TVFSV
Sbjct: 36 RNCIHPTVFSV 46


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 98  RNCIIDTVFSV 66
           RNCI  TVFSV
Sbjct: 484 RNCIHPTVFSV 494


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,015
Number of Sequences: 438
Number of extensions: 4576
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)