Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m23
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50510.1 68414.m05665 indigoidine synthase A family protein s...   180   1e-45
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi...    29   2.2  
At1g69800.1 68414.m08031 CBS domain-containing protein low simil...    28   5.1  
At3g03780.2 68416.m00387 5-methyltetrahydropteroyltriglutamate--...    28   6.8  
At3g03780.1 68416.m00386 5-methyltetrahydropteroyltriglutamate--...    28   6.8  

>At1g50510.1 68414.m05665 indigoidine synthase A family protein
           similar to IndA protein (GI:7576263) [Erwinia
           chrysanthemi]; contains Pfam profile PF04227:
           Indigoidine synthase A like protein
          Length = 330

 Score =  180 bits (437), Expect = 1e-45
 Identities = 90/177 (50%), Positives = 127/177 (71%), Gaps = 1/177 (0%)
 Frame = +2

Query: 152 NLETALEVENIIRQRGAVPATVAILKGQLTVGLTEDQLRYLAQ-AKGVIKASRRDLAYIA 328
           NL+TA EVE+I+R+ GA+PAT+AIL G   +GL+E++L  LA   K V K + RD+A + 
Sbjct: 63  NLQTAKEVESIVRENGAIPATIAILNGVPCIGLSEEELERLASLGKSVQKTAGRDIANVV 122

Query: 329 AAKLDGATTVAGTIIASELADIPVFVTGGIGGVHREGESTLDISADLNELGRSKTLVVCS 508
           A + +GATTV+ T+  + +  I VFVTGGIGGVHR    ++DIS+DL  LGR+   V+ +
Sbjct: 123 ATRGNGATTVSATLFFASMVGIQVFVTGGIGGVHRHANHSMDISSDLTALGRTPIAVISA 182

Query: 509 GIKSILDIGRTLEYLETQGVCVCSFGESNEFPAFYTVRSGHRAPYSVADAKHAARIL 679
           G+KSILDI +TLEYLETQ V V ++ +S+EFPAF+T +SG +AP  V   +  AR++
Sbjct: 183 GVKSILDIPKTLEYLETQEVYVAAY-KSDEFPAFFTEKSGCKAPSRVNSPEDCARVI 238


>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 952

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
 Frame = -1

Query: 633 R*PERTV*NAGNSLD-SPNEHTQTPC-VSKYSRVLPMSSIDLIPLQTTSVLLRPSSFRSA 460
           R PE+++ ++ +S   SP    +TP  ++    +   SS+   PL  + V  + SSF S+
Sbjct: 53  RRPEKSIGSSSSSSSPSPIPSPKTPLKINPLKGLTNRSSVS--PLVQSEVSSKVSSFGSS 110

Query: 459 -----EMSNVLSPSRWTPPIPPVTKT 397
                 +S+ LSP    PP PPV +T
Sbjct: 111 LASKLRLSSKLSPPPPPPPPPPVEET 136


>At1g69800.1 68414.m08031 CBS domain-containing protein low
           similarity to SP|Q9UGI9 5'-AMP-activated protein kinase,
           gamma-3 subunit (AMPK gamma-3 chain) (AMPK gamma3) {Homo
           sapiens}; contains Pfam profile PF00571: CBS domain
          Length = 447

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 492 VLLRPSSFRSAEMSNVLSPSRWTPPIPPVTKTGM 391
           V+L+   F+S  +  +L   RW P +P  T++ M
Sbjct: 196 VILQEEPFKSTTVRTILKSFRWAPFLPVSTESSM 229


>At3g03780.2 68416.m00387
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase, putative / vitamin-B12-independent
           methionine synthase, putative / cobalamin-independent
           methionine synthase, putative very strong similarity to
           SP|O50008
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
           methionine synthase isozyme) (Cobalamin-independent
           methionine synthase isozyme) {Arabidopsis thaliana};
           contains Pfam profile PF01717: Methionine synthase,
           vitamin-B12 independent
          Length = 765

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +3

Query: 543 SNIWKRKASVCVRLASLTSFQHFTRSVPVTGLRIALPTR 659
           S+IWK+ ++  ++     +F H+ + +  T +  A+P+R
Sbjct: 43  SDIWKQMSAAGIKYIPSNTFSHYDQVLDTTAMLGAVPSR 81


>At3g03780.1 68416.m00386
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase, putative / vitamin-B12-independent
           methionine synthase, putative / cobalamin-independent
           methionine synthase, putative very strong similarity to
           SP|O50008
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
           methionine synthase isozyme) (Cobalamin-independent
           methionine synthase isozyme) {Arabidopsis thaliana};
           contains Pfam profile PF01717: Methionine synthase,
           vitamin-B12 independent
          Length = 765

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +3

Query: 543 SNIWKRKASVCVRLASLTSFQHFTRSVPVTGLRIALPTR 659
           S+IWK+ ++  ++     +F H+ + +  T +  A+P+R
Sbjct: 43  SDIWKQMSAAGIKYIPSNTFSHYDQVLDTTAMLGAVPSR 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,409,940
Number of Sequences: 28952
Number of extensions: 332916
Number of successful extensions: 1022
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)