Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m21
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0341 - 4442727-4445597                                           29   3.5  
11_04_0137 + 13909204-13909315,13910002-13910999,13911058-139112...    28   6.1  
12_02_1066 + 25785749-25785868,25785953-25786141,25786250-257864...    28   8.0  

>04_01_0341 - 4442727-4445597
          Length = 956

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +2

Query: 170 IANILWTTQNSKRKARPRSPTLF*NDGSILVFHCRQTS----LRWPPSNNKYSETQTCTI 337
           +AN +W+     R A PR  + F    SI + +C + +    L WP S++     +T  I
Sbjct: 772 MANCIWSRG---RTASPRDDSSFAKLRSIHLHYCPRLTFVLPLSWPTSDSHLPSLETLHI 828

Query: 338 AVAASIVSVFP 370
              + +  +FP
Sbjct: 829 VYCSELRQIFP 839


>11_04_0137 +
           13909204-13909315,13910002-13910999,13911058-13911267,
           13911522-13912056,13912154-13912461
          Length = 720

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 375 LLGKTETIDAATAIVHVCVSEYLLLEGGQRSDVWR 271
           L+ KT  +D +    H  V E   LEGGQ  +VWR
Sbjct: 74  LVQKTTCVDRSGESSHAVVEE-TPLEGGQAENVWR 107


>12_02_1066 +
           25785749-25785868,25785953-25786141,25786250-25786414,
           25786649-25786999,25787924-25788001,25788137-25788277,
           25788415-25788459,25788597-25788763,25788833-25788911,
           25788985-25789067,25789219-25789348,25789432-25789564,
           25789955-25790103,25790339-25790534,25791086-25791288
          Length = 742

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +2

Query: 185 WTTQN-SKRKARPRSPTLF*NDGSILVFHCRQTSLRWPPSNN 307
           W  Q+    K +P +   F +DGS+L          W P NN
Sbjct: 464 WRCQSVGSYKNKPMTAATFSSDGSVLAVAAENVVTLWDPDNN 505


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,007,249
Number of Sequences: 37544
Number of extensions: 349250
Number of successful extensions: 895
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)