Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m21
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25080| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)                  29   2.7  
SB_43531| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.97)               29   3.6  
SB_28603| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_33959| Best HMM Match : Herpes_US9 (HMM E-Value=2)                  28   6.2  
SB_42507| Best HMM Match : ResIII (HMM E-Value=0.75)                   28   8.2  

>SB_25080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1007

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 147 NVSVVRRALQTYCGRRKIANERHVRALPRYSKTMDPY*FFIVAKRRSAGLLPITNTQKH- 323
           N +   R  Q  CG++  A   ++ +LP + + + PY  F+     S G  P  +  +H 
Sbjct: 125 NKTGTARLTQGSCGKKHKALRANLDSLPGFLRVLCPYRGFMAKATGSRGSAPQPSPDRHT 184

Query: 324 KHVQLLSRRQLS 359
            H  LL    LS
Sbjct: 185 MHAILLQVNILS 196


>SB_6137| Best HMM Match : NACHT (HMM E-Value=0.00017)
          Length = 1243

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 446 LMCLSVVTINEYLCCDKCL-FPIIDYLEKRRQLTPRQQLYMFVFLSICYW 300
           L+ L    ++E  CCD+C+   +ID L ++  + P + +       +CYW
Sbjct: 639 LLYLICECLHELKCCDQCIPDDVIDLLPQQIDIKP-EHMSSKAVSGLCYW 687


>SB_43531| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.97)
          Length = 431

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 231 VGERGRAFRLLFCVVHNMFAMLDGQQTHC-KKVRH 130
           +G+R    RL FC+V   F +   +Q    KKVRH
Sbjct: 255 MGDRAENERLSFCIVEECFMVCKAEQRRMRKKVRH 289


>SB_28603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 374 YLEKRRQLTPRQQLYMFVFLSICYWKEASGATFG 273
           +LE+R+ +  +QQ  M +  S C+  E + A FG
Sbjct: 40  FLERRKSMRGKQQAKMQIIFSHCHTVEMATARFG 73


>SB_33959| Best HMM Match : Herpes_US9 (HMM E-Value=2)
          Length = 363

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -3

Query: 261 TNMDPSF*NSVGERGRAFRLLFCVVHNMFAMLDGQQTHCKKVR 133
           T+M P+   S+G  G++FRL    + +  A+LD + TH ++VR
Sbjct: 206 THMTPTAPASIGGEGQSFRLQ--KICDTQAVLDNEITHHRQVR 246


>SB_42507| Best HMM Match : ResIII (HMM E-Value=0.75)
          Length = 1056

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 167 SIANILWTTQNSKRKARPRSPTLF*NDGSILVFH 268
           ++ N++W + N KR A PRS  ++   G ++V H
Sbjct: 304 ALGNVMWDSGNDKRGAIPRSTRIW-MCGRVMVTH 336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,809,877
Number of Sequences: 59808
Number of extensions: 434014
Number of successful extensions: 1292
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)