Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m21
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41680.2 68418.m05065 protein kinase family protein contains ...    29   3.8  
At5g41680.1 68418.m05064 protein kinase family protein contains ...    29   3.8  
At4g00010.1 68417.m00001 expressed protein                             27   8.9  
At3g56160.1 68416.m06242 expressed protein                             27   8.9  

>At5g41680.2 68418.m05065 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           receptor-like protein kinase (GI:4008006) [Arabidopsis
           thaliana]; similar to receptor-like kinase RHG1
           (GI:21239380) (GI:21239382) [Glycine max]
          Length = 333

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = -1

Query: 539 KSVLLKKWTQDVMDNELLIE 480
           +SV+ K+WT +V DNEL+++
Sbjct: 270 RSVVSKEWTGEVFDNELMMQ 289


>At5g41680.1 68418.m05064 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           receptor-like protein kinase (GI:4008006) [Arabidopsis
           thaliana]; similar to receptor-like kinase RHG1
           (GI:21239380) (GI:21239382) [Glycine max]
          Length = 359

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = -1

Query: 539 KSVLLKKWTQDVMDNELLIE 480
           +SV+ K+WT +V DNEL+++
Sbjct: 296 RSVVSKEWTGEVFDNELMMQ 315


>At4g00010.1 68417.m00001 expressed protein 
          Length = 340

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 242 NDGSILVFHCRQTSLRWPPSNNKYSE 319
           +D  IL  H R +S RW P + K SE
Sbjct: 165 SDSEILYLHARGSSSRWQPLSPKDSE 190


>At3g56160.1 68416.m06242 expressed protein 
          Length = 436

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 26/84 (30%), Positives = 40/84 (47%)
 Frame = +3

Query: 147 NVSVVRRALQTYCGRRKIANERHVRALPRYSKTMDPY*FFIVAKRRSAGLLPITNTQKHK 326
           N SVV R  Q  CGRR I+  R +RA     K    + F  +    S+ L+P ++  +  
Sbjct: 25  NRSVVFRRCQDPCGRRWIS--RSIRACQPSDKVSGQFPFDFM---YSSMLIP-SSCGEWN 78

Query: 327 HVQLLSRRQLSPFFQVIYYGKQTL 398
            + L     +S   Q +Y+GK+ L
Sbjct: 79  RIHLGGDGGISASAQRLYFGKELL 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,256,972
Number of Sequences: 28952
Number of extensions: 298163
Number of successful extensions: 736
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)