Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10m20
(722 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29470.1 68414.m03605 dehydration-responsive protein-related ... 33 0.19
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 31 0.58
At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recogniti... 30 1.8
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 30 1.8
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 30 1.8
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 29 2.4
At1g23230.1 68414.m02906 expressed protein 29 4.1
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 28 5.5
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f... 28 5.5
At1g75260.1 68414.m08743 isoflavone reductase family protein sim... 28 7.2
At1g19000.2 68414.m02364 myb family transcription factor similar... 28 7.2
At1g19000.1 68414.m02363 myb family transcription factor similar... 28 7.2
At5g12410.1 68418.m01459 THUMP domain-containing protein contain... 27 9.5
At2g20950.1 68415.m02471 expressed protein 27 9.5
>At1g29470.1 68414.m03605 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 770
Score = 33.1 bits (72), Expect = 0.19
Identities = 26/119 (21%), Positives = 51/119 (42%)
Frame = +1
Query: 73 TMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSL 252
T + S KD+ +D KS+ + D E V+ + T+ +
Sbjct: 45 TESIDFSANERTKDVDTTKSDFKSEEVDRGSKSFPDEKNEETEVVTETNEEKTDPEKSGE 104
Query: 253 FDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKN 429
+ EK +S++ + E +KN D+ EK ++ D + +KTQ++ ++ E K+
Sbjct: 105 ENSGEKTESAE-ERKEFDDKNGDGDRKNGDGEKDTESESDETKQKEKTQLEESSEENKS 162
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 31.5 bits (68), Expect = 0.58
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 175 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKA 354
R+ + NE+ + + E E+ K+ + EK Q+K + +E+N K+V+ +
Sbjct: 744 REKEENERRIKEAREKAELEQRLKATLEQEEK--ERQIKERQEREENERRAKEVLEQAEN 801
Query: 355 HQNLLDGVEHFD-KTQMKHTTTEEKN 429
+ L + +E + + ++K T +E+N
Sbjct: 802 ERKLKEALEQKENERRLKETREKEEN 827
>At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recognition
Nexus) repeat-containing protein contains Pfam profile
PF02493: MORN repeat
Length = 871
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +1
Query: 232 EKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHT 411
EK+ K + DG+EK+ + K E +++ + ++V AE L + +E D+ K
Sbjct: 581 EKSVKPMLDGLEKWTEEKKKAYEERKEMIQQELELVEAEIC---LEEAIEDMDEELKKKE 637
Query: 412 TTEEK 426
EEK
Sbjct: 638 QEEEK 642
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 29.9 bits (64), Expect = 1.8
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Frame = +1
Query: 16 RVAECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNE 195
R+A C P ++ F + S S + SL+D+ ++ +LK L+G + VDTN
Sbjct: 513 RIASCKQR-HPKWQRVE-FENSDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTNL 570
Query: 196 KIVLPSAEDVA-TEKTQKSLFD---GIEKFDS 279
+AE A EK +L EKFDS
Sbjct: 571 DAEDRAAERKAEVEKAVSTLAQKSKPTEKFDS 602
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +1
Query: 73 TMACSVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQ 243
T S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E
Sbjct: 74 TSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIV 133
Query: 244 KS 249
S
Sbjct: 134 SS 135
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 116 SPRSPQT*RVSSKASTPAVSVTSTPMRRLCFRLL--KTSPLRRPRSLYSTVSRS 271
SP ++ R S++ P+ S +S R + ++ PL R RSLYS+VSRS
Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRS 246
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 559 PLWGAGSSRTFPCASA*WDRSSRC-RSGICSFPSP 458
PL+G + + P S W+R+ RC R I + PSP
Sbjct: 393 PLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSP 427
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 237 LLSGDVFSRRKHNLLIGVDVTETAGVEAFELTLQVCGDLG 118
++ G+ +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
family protein similar to pVHL-interacting
deubiquitinating enzyme 1 type II [Homo sapiens]
GI:18698435; contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 974
Score = 28.3 bits (60), Expect = 5.5
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 4/109 (3%)
Frame = +3
Query: 309 EEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPER 488
E +R +SPP PLG + L ++ DD +E +S G G +
Sbjct: 446 EREVKRKRVMERSDSPPPPLGFNNPLLPLANTYDDDDEEEENEQKKSQARGNGVAKGEGN 505
Query: 489 HRELRSH-*AEAHGNVREEPAPHKGRH*AREISLNH---YFITVTRKCI 623
+++ E + ++ + KG+H +R + + Y TV R+ +
Sbjct: 506 GNKVKGEAQEEVDDDEDDDVSKGKGKH-SRHVEVRRDCPYLDTVNRQVL 553
>At1g75260.1 68414.m08743 isoflavone reductase family protein
similar to SP|P52577 Isoflavone reductase homolog P3 (EC
1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile
PF02716: Isoflavone reductase
Length = 593
Score = 27.9 bits (59), Expect = 7.2
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Frame = +3
Query: 408 HDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*-AEAHGN-VREEPAPHKGRH*AREI 581
H KE + R+ E +Q H+ R H AE H V E+ +PH +
Sbjct: 499 HGCRNKEEDIAAYTMRAIENSQQ-DSLHQSSREHCFAERHHRIVGEQESPHPLD---LLL 554
Query: 582 SLNHYFITVTRKCISLVSPYFNIDVSQI 665
+LNH + V PYF ++ SQ+
Sbjct: 555 ALNHAIFVKGDQTYFTVEPYFEVEASQL 582
>At1g19000.2 68414.m02364 myb family transcription factor similar to
MybSt1 GI:7705206 from [Solanum tuberosum]
Length = 285
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 235 KTQKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD 372
+ + SLFD E ++ TQE +PLP+ ++ + ++A Q D
Sbjct: 158 RRRSSLFDITTETVTEMAMEQDPTQENSPLPETNISSGQQAMQVFTD 204
>At1g19000.1 68414.m02363 myb family transcription factor similar to
MybSt1 GI:7705206 from [Solanum tuberosum]
Length = 285
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 235 KTQKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD 372
+ + SLFD E ++ TQE +PLP+ ++ + ++A Q D
Sbjct: 158 RRRSSLFDITTETVTEMAMEQDPTQENSPLPETNISSGQQAMQVFTD 204
>At5g12410.1 68418.m01459 THUMP domain-containing protein contains
Pfam profile PF02926: THUMP domain
Length = 376
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +1
Query: 184 DTNEKIVLPSAEDVATEKTQKSLFDGI-EKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQ 360
D ++ +V D+ EK S +G+ ++ + ++ + E L + + V E+
Sbjct: 110 DGDKAVVSEGGNDLVNEKEIAS--EGVNDQVNEKEIASEGSCEVKQLAENETVKEEEDKG 167
Query: 361 NLLDGVEHFDKTQMKHTTTEEKNPL 435
N +G D+ K T TEE NPL
Sbjct: 168 NQKNGG---DEPPRKKTCTEEANPL 189
>At2g20950.1 68415.m02471 expressed protein
Length = 520
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 438 PDRSYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLNHY 596
PDR RS E +++ ER E ++ + H PAP+ R+ S Y
Sbjct: 120 PDRRKRSSEITKELYERMYEADANVSPFHPFRSRSPAPYNTHERGRDYSRERY 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,069,034
Number of Sequences: 28952
Number of extensions: 318062
Number of successful extensions: 1168
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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