Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m16
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    31   0.20 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.4  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    26   4.2  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    26   4.2  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   6.4  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   7.4  

>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 484 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGL-VQANTMLNEARR 633
           G++    KK+        E+ EK+ H  + ++ A AGL   AN ++N ARR
Sbjct: 42  GIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARR 92


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 334 LITKEGVIQLIMKSKLPYAVELQAWLLEEVIPQVL-CTGKYAPAVKMDTNYGVI 492
           L+ K+GV+ L+ K KLP++V  +  ++     + L    K+     +D+ Y V+
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMIIAGGRKEFLELLDKFEMLDMLDSGYPVV 595


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +1

Query: 100 EDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYT 273
           E +FTL+ ++E G  + +    DIA +L++++ +Q         Y+  Y+  G+ P++
Sbjct: 386 ETSFTLQALVESGLYEKEAFKPDIAKALEFLDRQQIRTQYEGSGYR--YNSLGAWPFS 441


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +1

Query: 490 IEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMA 663
           IEE  KKL   +E L++ N  +      L T N  LV+    LN    E  QL  ++A
Sbjct: 90  IEESYKKLEEKTEHLSDDNVSLEKRVEYLETENTKLVKT---LNSLNSEFLQLLRKIA 144


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 466 KMDTNYGVIEELNKKLAFASESLAEANEKI 555
           K++ +   +++L KKLA  ++   E NEKI
Sbjct: 218 KLEVSSRQVQDLEKKLAGLAQQNTELNEKI 247



 Score = 22.6 bits (46), Expect(2) = 6.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 490 IEELNKKLAFASESLAEANEKIIHFANALVTANAGL 597
           IEE  K+  FAS S     E ++   +ALV+  A L
Sbjct: 173 IEERKKQHMFASSSSRVKEEILVQEKSALVSDLASL 208



 Score = 21.0 bits (42), Expect(2) = 6.4
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 589 AGLVQANTMLNE 624
           AGL Q NT LNE
Sbjct: 234 AGLAQQNTELNE 245


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 296 LTTLSGAGVYGIDPDSLYVVLYFLS 222
           L+ L+    Y +DPD +Y +L FLS
Sbjct: 800 LSALASTIGYKLDPDDVYNILSFLS 824


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,778
Number of Sequences: 5004
Number of extensions: 48928
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)