Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m15
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.70 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.70 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.70 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   0.93 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   0.93 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   0.93 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   0.93 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.6  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   6.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -1

Query: 579 QRVEIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVVV 415
           ++V ++   L+  + F  +V  I  P ++   ++  +  FA I   +  CV VVV
Sbjct: 274 EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVV 328


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -1

Query: 579 QRVEIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVVV 415
           ++V ++   L+  + F  +V  I  P ++   ++  +  FA I   +  CV VVV
Sbjct: 274 EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVV 328


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 475 QFQDLCKNLLHCRILRSCRCARICT*NCAC 386
           +++  C  L HC    +C C   C   C C
Sbjct: 738 RYEAHCFALCHCCDFDACDCEMTCPAGCKC 767


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 385 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 474
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 385 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 474
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 385 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 474
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 385 NTHSFKYRYVHNDTNAKFYNVIDFCKGLEI 474
           + +++KY Y +N+ N K Y  I++ + + I
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 45  RICKIQTWTRSRCSIGRTWTGIFFVTL 125
           ++ K  TWT  R +I +T TG  F+T+
Sbjct: 487 QVIKQNTWTVFRDAITQTGTGPAFLTI 513


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 514 QVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHL 666
           Q YH+  + F KQK  ++   L       +  L  LM   F NKS  ++ +
Sbjct: 9   QHYHITPV-FTKQKKVKEDTELNLQTIFNEDKLDNLMDKQFKNKSLPVIEI 58


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -1

Query: 579 QRVEIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVVV 415
           ++V ++   LL    F  ++  I  P ++   ++  F  F  I      CV VVV
Sbjct: 270 EKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMILDTFSICVTVVV 324


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +1

Query: 304 FDPDDYKKYHINVQQWSHIVKWDSFKCNTHSFKYRYVHNDTN 429
           FD  D   Y+ N  Q  H  K D+   N H+ +  +     N
Sbjct: 417 FDNQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSKSNN 458


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 160 IIIAVRCAYLFVNVTKNIPVHVRPIL 83
           +I  +RC YLF++V       V P++
Sbjct: 1   MISMLRCIYLFLSVILITSYFVTPVM 26


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -1

Query: 570 EIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVVV 415
           +I F   L +      VNLI   ++I Y+ V  F   A     +  C+ +++
Sbjct: 224 DIFFNITLRRKTLFYTVNLIVPCVSISYLSVLAFYLPADSGEKIALCINILL 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,878
Number of Sequences: 438
Number of extensions: 3798
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)