Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m15
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03990.1 68418.m00379 expressed protein predicted protein, Ar...    30   1.3  
At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR ...    29   4.0  
At1g02730.1 68414.m00226 cellulose synthase family protein simil...    29   4.0  
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica...    28   5.3  
At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearl...    28   7.0  
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel...    27   9.2  

>At5g03990.1 68418.m00379 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 302

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
 Frame = +1

Query: 316 DYKKYHINVQQWSH-----IVKWDSFKCNTHSFKYRYVHN 420
           D+   + N   W H        WD   CN +SF Y+ V N
Sbjct: 207 DHNNNNTNTDSWDHNNNFKAETWDQKNCNNNSFNYKKVEN 246


>At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 787

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +1

Query: 415 HNDTNAKFYNVIDFCKGLEIAHDDILDCN-WDSDQVYHLNEIIFHKQKSKRDLNSLGALF 591
           H      FY +++  + L    + +L CN W+   VYH N++   +++  R LNS   LF
Sbjct: 62  HQTQLGVFYEILEKARKL---CEKVLRCNRWNLKHVYHANKMKDLEKQISRFLNSQILLF 118

Query: 592 ATKQGLLKILMRLNFDNKSNALLHLQTE 675
              +      +R+N D     +  L TE
Sbjct: 119 VLAE---VCHLRVNGDRIERNMDRLLTE 143


>At1g02730.1 68414.m00226 cellulose synthase family protein similar to
            cellulose synthase catalytic subunit [gi:13925881] from
            Nicotiana alata, cellulose synthase-4 [gi:9622880] from
            Zea mays
          Length = 1181

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = -1

Query: 597  GREQCAQRVEIAFGFLLVKNNFV*MVNLIAVPIAIKYVVVRNFKTFAKIYYIVEFCVRVV 418
            G ++ A    + + FL+V    + MVN+IA+ + +   +   F  ++K+   V F   V+
Sbjct: 1068 GDDEFADLYVVKWSFLMVPPLTIMMVNMIAIAVGLARTLYSPFPQWSKLVGGVFFSFWVL 1127

Query: 417  VHV 409
             H+
Sbjct: 1128 CHL 1130


>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 862

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = +1

Query: 502 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGL---LKILMRLNFDNKSNALLHLQT 672
           W+      LN +  ++   + D    G +FA   GL   L +L  + FD   NA     T
Sbjct: 236 WEEKDGEFLNTLTNYRSDKRPD-PLRGGVFADDMGLGKTLTLLSLIAFDRYGNASTSTPT 294

Query: 673 EGERDDLRDKIE 708
           E   D   DKIE
Sbjct: 295 EEPLDGEGDKIE 306


>At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearly
           identical to acyl-activating enzyme 18 [Arabidopsis
           thaliana] GI:29893268; similar to acetyl-CoA synthetase
           [SP|P27095] from Methanothrix soehngenii; contains Pfam
           AMP-binding enzyme domain PF00501l; identical to cDNA
           acyl-activating enzyme 18 (At1g55320) GI: 29893267
          Length = 725

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 57  IQTWTRSRCSIGRTWTGIFFVTLTNK 134
           ++TW R+ C  G  WT I F   T +
Sbjct: 452 VKTWKRTNCMEGLNWTKIKFFATTGE 477


>At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to Lipopolysaccharide-responsive and beige-like anchor
            protein (CDC4-like protein) (Beige-like protein)
            (SP:P50851) [Homo sapiens}
          Length = 1280

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
 Frame = +1

Query: 358  IVKWDSFKCNTHSFKYRYVHNDTNAKFYNVIDFCKGLEIAHDDILDC---NWDSDQVYHL 528
            ++ WD  +  T   + R  H +   K   + D    +   HDDI+ C   + D D V   
Sbjct: 1070 VMVWDILRMRTPEKRVRNTHAEVLRKDIVIADAPSHILCGHDDIITCLYVSTDLDIVISG 1129

Query: 529  NE---IIFHKQKSKRDLNSL 579
            ++    +FH  +  R + SL
Sbjct: 1130 SKDGTCVFHTLREGRYIRSL 1149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,213,888
Number of Sequences: 28952
Number of extensions: 254090
Number of successful extensions: 696
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)