Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m14
         (539 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    23   1.3  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   3.0  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    22   4.0  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   9.2  

>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 77  PRLLFFYSVPVTERETSP 130
           PR+L ++ + +TE E+ P
Sbjct: 224 PRVLMYFDIFITEHESKP 241


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin
          deacetylase 1 protein.
          Length = 534

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 63 FKVRVCSCRARVFASQRAEE 4
          F + +C+C   VFA Q+AEE
Sbjct: 9  FILAICACT--VFAQQQAEE 26


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 19  RREHTRPT*TNAHLKTIERTPSIIFLF 99
           RR  +R     A +KT++ T  I+F+F
Sbjct: 269 RRASSRGIIPRAKIKTVKMTLVIVFVF 295


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 447 HQDTGEGRGARVCGHRPQGG 506
           + D+G GRG    G R  GG
Sbjct: 88  NDDSGGGRGGGRDGDRGDGG 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,290
Number of Sequences: 336
Number of extensions: 1626
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)