Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10m14
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0377 - 22900042-22900452,22900527-22902236 31 0.59
11_08_0048 - 28022335-28022520,28022607-28022699,28022804-280228... 31 0.78
05_01_0426 + 3364341-3364713,3364823-3364963,3365389-3365510,336... 29 2.4
08_01_1068 + 10899965-10900129,10900408-10900562,10900688-109009... 29 3.1
02_05_0551 + 29907768-29907909,29907995-29909280 29 3.1
01_05_0092 - 18058555-18060084 28 4.1
09_04_0436 - 17558603-17559265,17559322-17559384 28 5.5
10_08_0964 + 21906737-21907993 27 7.2
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388... 27 7.2
07_03_1439 - 26556398-26556418,26556700-26557743 27 7.2
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 31.1 bits (67), Expect = 0.59
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 237 GAEHAEPGRQLAGEQPAGEPARVR 308
GA H GR+L G +P GE ARVR
Sbjct: 404 GANHNGEGRRLRGPRPDGEEARVR 427
>11_08_0048 -
28022335-28022520,28022607-28022699,28022804-28022882,
28022951-28023061,28023133-28023390,28023468-28023970,
28024094-28024729,28024778-28025116
Length = 734
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +1
Query: 271 PASNPLGSPLGFAPPPDDRTXKSQNMTECVPVPSSEHVAXIVGXQGCKIKALRAKTNTY- 447
P ++P GS A PP ++ + Q++ P PS + +G + + +T+T+
Sbjct: 301 PVASPPGSEPPVASPPTEKDAEEQSLVPDQPEPSQLEPSQPEELKGADVPVM-VRTHTHK 359
Query: 448 IKTPVRGEEPVFVVTGRKEDVTRAK 522
K+ + + V GR +D+ A+
Sbjct: 360 AKSASKKKYMVTAFRGRDKDIINAE 384
>05_01_0426 +
3364341-3364713,3364823-3364963,3365389-3365510,
3365939-3366202,3366289-3366419,3366819-3367026,
3367121-3367186,3367276-3367353,3368038-3368079
Length = 474
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 282 PAGEPARVRASSGRPDQXVAEHD 350
P PAR S +PD +AEHD
Sbjct: 15 PKSSPARSTRSKSKPDSDIAEHD 37
>08_01_1068 +
10899965-10900129,10900408-10900562,10900688-10900996,
10901870-10901939,10902504-10902802,10904305-10904724,
10906063-10906324
Length = 559
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 122 FPSRSLVLNKKIIDGVRSIVLRCAFVHVGRVCSRRSALR 6
F ++V N +DG S V RC+ V R CS S L+
Sbjct: 256 FKGCTVVGNHSDVDGAASTVRRCSSVANSRCCSAHSRLQ 294
>02_05_0551 + 29907768-29907909,29907995-29909280
Length = 475
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 234 SGAEHAEPGRQLAGEQPAGEPARVRASSG 320
SGA A PG QLAG + A PA + S G
Sbjct: 110 SGAAAAAPGMQLAGSKAATVPANLGFSIG 138
>01_05_0092 - 18058555-18060084
Length = 509
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 228 AGSGAEHAEPGRQLAGEQPAGEPARVRASSGRPDQXVAEHDG 353
A SG E +PG+ P G+ A R+ SG A DG
Sbjct: 21 AESGEEGGDPGKDEVAAPPKGDSALPRSGSGFGSGNAAAPDG 62
>09_04_0436 - 17558603-17559265,17559322-17559384
Length = 241
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 538 PRGSHAWRA*RPPCGR*PQTRAPR 467
P S +WR PPC R P +RA R
Sbjct: 179 PTPSLSWRTTPPPCQRHPSSRASR 202
>10_08_0964 + 21906737-21907993
Length = 418
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 149 EAILSIKERFPSRSLVLNKKIIDGVRSIVLRCAFVHVGRVCS 24
E ++ I R P +SL+ K + G R+I+ +F+ CS
Sbjct: 31 EIVVEILARLPVKSLLRFKSVCRGWRAIISEPSFIRTQLQCS 72
>09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,
3881287-3883916
Length = 1163
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 456 TGEGRGARVCGHRPQGG 506
+G G G RVCGHR GG
Sbjct: 1056 SGCGGGDRVCGHRRHGG 1072
>07_03_1439 - 26556398-26556418,26556700-26557743
Length = 354
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 235 LELSMLSLGDNLPASNPLGSPLGFAPPPDD 324
L L++LSLG L A+NPL +P A DD
Sbjct: 102 LSLAVLSLGAVLSAANPLLTPDELARQADD 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,480,333
Number of Sequences: 37544
Number of extensions: 225992
Number of successful extensions: 871
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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