Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10m14
(539 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16824| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 7e-10
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24) 29 1.8
SB_40090| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_49575| Best HMM Match : Laminin_G_2 (HMM E-Value=4.2) 28 4.2
SB_44504| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_1284| Best HMM Match : KH_1 (HMM E-Value=1.2e-07) 28 5.6
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 27 7.4
SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29) 27 9.8
SB_52505| Best HMM Match : DUF963 (HMM E-Value=0.81) 27 9.8
SB_50792| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_16824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 60.9 bits (141), Expect = 7e-10
Identities = 39/65 (60%), Positives = 42/65 (64%)
Frame = +1
Query: 211 DQRAFKLXLELSMLSLGDNLPASNPLGSPLGFAPPPDDRTXKSQNMTECVPVPSSEHVAX 390
DQRA ++ LELSML L N SNP F D R+ KS NMTECVPVPSSEHVA
Sbjct: 9 DQRALQIALELSMLGL-TNDEDSNP-----NF---DDLRSKKSMNMTECVPVPSSEHVAE 59
Query: 391 IVGXQ 405
IVG Q
Sbjct: 60 IVGRQ 64
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 31.1 bits (67), Expect = 0.60
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 253 SLGDNLPASNPLGSPLGFAPPPDDRTXKSQNMTECVPVPSSEHVAXIVG-XQGCKIKA 423
++G+ +P P G+P F PP +T + + + E +P + G Q CK+ A
Sbjct: 1100 NMGNMMPQGGPPGAPPSFGPPQSLQTQEQEVIKEPIPAEHAVLQETFNGLVQKCKVTA 1157
>SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)
Length = 1497
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +1
Query: 301 GFAPPPDDRTXKSQNMTECVPVPSSEHVAXIVGXQGCKIKALRAKTN 441
G AP P RT + MT P S+H A G + +R N
Sbjct: 299 GAAPAPSPRTHAAHRMTAPGPGEKSDHTALRAGLSALAVLCIRQTKN 345
>SB_40090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -1
Query: 443 VLVFARKALI-LHPCXPTIXATCSEDGTGTHSVMFCDXLVRSSGGGANP 300
V V AR++LI H C +T + T + L+ +SG G P
Sbjct: 2 VRVLARRSLINAHACATETVSTHGRGASATDEQRLLERLINASGSGVRP 50
>SB_49575| Best HMM Match : Laminin_G_2 (HMM E-Value=4.2)
Length = 580
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 237 GAEHAEPGRQLAGEQPAGEPARVRASSGRPDQXVAEHD 350
G +HA+ L GE AG+ ARV G+P + AE D
Sbjct: 501 GGDHAD---YLVGEPHAGDAARVFPLEGKPVKDHAERD 535
>SB_44504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 225 QAGSGAEH-AEPGRQLAGEQPAGEPARVRASS 317
Q + A+H AEP +Q A EQ A EPAR A +
Sbjct: 184 QGSTSAQHLAEPDKQ-AAEQTAHEPAREEAGA 214
>SB_1284| Best HMM Match : KH_1 (HMM E-Value=1.2e-07)
Length = 333
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 391 IVGXQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGR-KEDVTRAKREI 531
I+G +G + + TNT I P G+ V+TG+ K +V A+ ++
Sbjct: 82 IIGYKGNTKRQIEQDTNTRISIPRVGQTGDIVITGQSKAEVLSARHKV 129
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 370 SSEHVAXIVGXQGCKIKALRAKTNTYI 450
SS V+ I+G GC + A+R T +I
Sbjct: 917 SSSVVSRIIGRAGCNVNAIRETTGAHI 943
>SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)
Length = 1130
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 513 RDVLLAAGDHKHGLLAPHRCLDVSVSLRSQ 424
RD+L +AGD+ L P +CL++ L Q
Sbjct: 50 RDLLFSAGDYDTRSLDPKKCLEICGKLYFQ 79
>SB_52505| Best HMM Match : DUF963 (HMM E-Value=0.81)
Length = 388
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 143 ILSIKERFPSRSLVLNKKIIDGVRSIVLRCAF 48
I+S + R S++L K+ DG+RS ++ C F
Sbjct: 239 IISCRVRVCWNSVILVKREFDGIRSSLVACEF 270
>SB_50792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 143 ILSIKERFPSRSLVLNKKIIDGVRSIVLRCAF 48
I+S + R S++L K+ DG+RS ++ C F
Sbjct: 7 IISCRVRVCWNSVILVKREFDGIRSSLVACEF 38
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 276 EQPAGEPARVRASSGRPDQXVAEHDGV 356
+QPA +P+ A+ P Q V E GV
Sbjct: 2169 QQPASQPSEATAAVSAPSQRVKESSGV 2195
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,531,762
Number of Sequences: 59808
Number of extensions: 226554
Number of successful extensions: 667
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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