Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10m14
(539 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein. 114 4e-26
AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess... 114 4e-26
AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess... 114 4e-26
U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical pr... 31 0.70
U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical pr... 31 0.70
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n... 30 0.93
U41991-9|AAA83349.1| 297|Caenorhabditis elegans Hypothetical pr... 29 2.1
AL110500-12|CAB60432.1| 362|Caenorhabditis elegans Hypothetical... 28 4.9
U80444-6|AAO12449.1| 93|Caenorhabditis elegans Hypothetical pr... 27 6.5
>U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein.
Length = 415
Score = 114 bits (274), Expect = 4e-26
Identities = 63/109 (57%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Frame = +1
Query: 208 EDQRAFKLXLELSMLSLGDNLPASNPLGSPLGFAPPPDDRTXKS-QNMTECVPVPSSEHV 384
E+Q A+KL ++ + +P+ P A + RT QN+TE V VP+SEHV
Sbjct: 3 EEQIAYKLP---GAWYYEEDTASCSPVSDPEDIAQFLNYRTSIGVQNVTESVEVPTSEHV 59
Query: 385 AXIVGXQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVTRAKREI 531
A IVG QGCKIKALRAKTNTYIKTPVRGE+P+FVVTGR EDV AKREI
Sbjct: 60 AEIVGRQGCKIKALRAKTNTYIKTPVRGEDPIFVVTGRLEDVNEAKREI 108
Score = 50.4 bits (115), Expect = 8e-07
Identities = 28/62 (45%), Positives = 37/62 (59%)
Frame = +1
Query: 346 MTECVPVPSSEHVAXIVGXQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVTRAKR 525
+T V VP V +VG +G IK ++ T+TYI TP R EPVF VTG +V A++
Sbjct: 137 ITSYVRVPLRV-VGLVVGPKGATIKRIQQDTHTYIITPSREREPVFEVTGLPHNVEAARK 195
Query: 526 EI 531
EI
Sbjct: 196 EI 197
>AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess
protein 3, isoform a protein.
Length = 415
Score = 114 bits (274), Expect = 4e-26
Identities = 63/109 (57%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Frame = +1
Query: 208 EDQRAFKLXLELSMLSLGDNLPASNPLGSPLGFAPPPDDRTXKS-QNMTECVPVPSSEHV 384
E+Q A+KL ++ + +P+ P A + RT QN+TE V VP+SEHV
Sbjct: 3 EEQIAYKLP---GAWYYEEDTASCSPVSDPEDIAQFLNYRTSIGVQNVTESVEVPTSEHV 59
Query: 385 AXIVGXQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVTRAKREI 531
A IVG QGCKIKALRAKTNTYIKTPVRGE+P+FVVTGR EDV AKREI
Sbjct: 60 AEIVGRQGCKIKALRAKTNTYIKTPVRGEDPIFVVTGRLEDVNEAKREI 108
Score = 50.4 bits (115), Expect = 8e-07
Identities = 28/62 (45%), Positives = 37/62 (59%)
Frame = +1
Query: 346 MTECVPVPSSEHVAXIVGXQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVTRAKR 525
+T V VP V +VG +G IK ++ T+TYI TP R EPVF VTG +V A++
Sbjct: 137 ITSYVRVPLRV-VGLVVGPKGATIKRIQQDTHTYIITPSREREPVFEVTGLPHNVEAARK 195
Query: 526 EI 531
EI
Sbjct: 196 EI 197
>AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess
protein 3, isoform b protein.
Length = 443
Score = 114 bits (274), Expect = 4e-26
Identities = 63/109 (57%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Frame = +1
Query: 208 EDQRAFKLXLELSMLSLGDNLPASNPLGSPLGFAPPPDDRTXKS-QNMTECVPVPSSEHV 384
E+Q A+KL ++ + +P+ P A + RT QN+TE V VP+SEHV
Sbjct: 34 EEQIAYKLP---GAWYYEEDTASCSPVSDPEDIAQFLNYRTSIGVQNVTESVEVPTSEHV 90
Query: 385 AXIVGXQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVTRAKREI 531
A IVG QGCKIKALRAKTNTYIKTPVRGE+P+FVVTGR EDV AKREI
Sbjct: 91 AEIVGRQGCKIKALRAKTNTYIKTPVRGEDPIFVVTGRLEDVNEAKREI 139
Score = 50.4 bits (115), Expect = 8e-07
Identities = 28/62 (45%), Positives = 37/62 (59%)
Frame = +1
Query: 346 MTECVPVPSSEHVAXIVGXQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVTRAKR 525
+T V VP V +VG +G IK ++ T+TYI TP R EPVF VTG +V A++
Sbjct: 165 ITSYVRVPLRV-VGLVVGPKGATIKRIQQDTHTYIITPSREREPVFEVTGLPHNVEAARK 223
Query: 526 EI 531
EI
Sbjct: 224 EI 225
>U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical
protein F26B1.2c protein.
Length = 380
Score = 30.7 bits (66), Expect = 0.70
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 370 SSEHVAXIVGXQGCKIKALRAKTNTYIKTP-VRGEEPVFVVTGRKEDVTRAKREIL 534
SS+ I+G G IK LRA+ N +++ P E V VT ++ V +++L
Sbjct: 40 SSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVCTVTADEKTVLNILKDVL 95
>U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical
protein F26B1.2a protein.
Length = 397
Score = 30.7 bits (66), Expect = 0.70
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 370 SSEHVAXIVGXQGCKIKALRAKTNTYIKTP-VRGEEPVFVVTGRKEDVTRAKREIL 534
SS+ I+G G IK LRA+ N +++ P E V VT ++ V +++L
Sbjct: 57 SSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVCTVTADEKTVLNILKDVL 112
>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 62
protein.
Length = 1256
Score = 30.3 bits (65), Expect = 0.93
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 310 PPPDDRTXKSQN--MTECVPVPSSEHVAXIVGXQGCKIKALRAKTNTYIKTPV 462
PPP++ + QN MTE +P S+EHV+ Q + + + I+TPV
Sbjct: 613 PPPENSQLQFQNFGMTETIPQQSNEHVSQ-QQQQIAQSRPMNLNQQQVIETPV 664
>U41991-9|AAA83349.1| 297|Caenorhabditis elegans Hypothetical
protein C42D4.11 protein.
Length = 297
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 152 WEAILSIKERFPSRSLVLNKKIIDGVRSI 66
W+ S+ ER+PS+ + + IDGVR +
Sbjct: 180 WKTAYSLVERYPSQPKITERIWIDGVRKV 208
>AL110500-12|CAB60432.1| 362|Caenorhabditis elegans Hypothetical
protein Y87G2A.11 protein.
Length = 362
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = -1
Query: 425 KALILHPCXPTIXATCSEDGT---GTHSV 348
+A+ HP TI ATC+ D + GTHS+
Sbjct: 67 RAIAAHPTKSTILATCTADFSSLGGTHSI 95
>U80444-6|AAO12449.1| 93|Caenorhabditis elegans Hypothetical
protein F26B1.2e protein.
Length = 93
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 370 SSEHVAXIVGXQGCKIKALRAKTNTYIKTP 459
SS+ I+G G IK LRA+ N +++ P
Sbjct: 57 SSKSAGAIIGKGGENIKRLRAEFNAHVQVP 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,671,111
Number of Sequences: 27780
Number of extensions: 165035
Number of successful extensions: 510
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -