Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m14
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37035.1 68415.m04543 expressed protein                             32   0.21 
At1g32230.2 68414.m03965 WWE domain-containing protein / ceo pro...    30   1.1  
At1g32230.1 68414.m03964 WWE domain-containing protein / ceo pro...    30   1.1  
At2g35510.1 68415.m04349 WWE domain-containing protein contains ...    28   3.5  
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit...    27   6.1  
At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid t...    27   8.0  

>At2g37035.1 68415.m04543 expressed protein
          Length = 433

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -1

Query: 533 RISRLARVTSSLRPVTTNTGSSPLTGVLM*VLVFARKALILH 408
           R+SRL   T  LR  T++  S PLT + +  L+F+  +L+ H
Sbjct: 14  RLSRLRTTTQLLRQTTSSFSSHPLTFIFLTFLLFSFHSLVDH 55


>At1g32230.2 68414.m03965 WWE domain-containing protein / ceo
           protein, putative (CEO) contains Pfam domain, PF02825:
           WWE domain; identical to cDNA for ceo protein (ceo gene)
           GI:11044956
          Length = 588

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 392 SSDXKGARLKLCERRLTLTSRHR*GARSPCLWSPAARRTSRA 517
           SS+   ARL L ++++ +T +HR  A     W PA R    A
Sbjct: 301 SSEIAEARLALFQKQVEITKKHRGDANVRYAWLPAKREVLSA 342


>At1g32230.1 68414.m03964 WWE domain-containing protein / ceo
           protein, putative (CEO) contains Pfam domain, PF02825:
           WWE domain; identical to cDNA for ceo protein (ceo gene)
           GI:11044956
          Length = 589

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 392 SSDXKGARLKLCERRLTLTSRHR*GARSPCLWSPAARRTSRA 517
           SS+   ARL L ++++ +T +HR  A     W PA R    A
Sbjct: 301 SSEIAEARLALFQKQVEITKKHRGDANVRYAWLPAKREVLSA 342


>At2g35510.1 68415.m04349 WWE domain-containing protein contains
           Pfam domain, PF02825: WWE domain
          Length = 568

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 392 SSDXKGARLKLCERRLTLTSRHR*GARSPCLWSPAARRTSRA 517
           SS+   ARL L +++  +T +HR  A     W PA +    A
Sbjct: 297 SSEIAKARLSLFQKQADITKKHRGDANIRYAWVPAKKEVLSA 338


>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 92  KIIDGVRSIVLRCAFVHVGRVCSRRSALRN 3
           K++DGV    +R   VHV RV S   AL N
Sbjct: 169 KVMDGVVKSAIRRRVVHVARVTSNALALVN 198


>At1g05450.2 68414.m00553 protease inhibitor/seed storage/lipid
           transfer protein (LTP)-related similar to geranyl
           diphosphate synthase large subunit [Mentha x piperita]
           GI:6449052
          Length = 205

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 265 NLPASNPLGSPLGFAPPPDDRTXKSQN 345
           +L  S   G P+GFAPPP   +  S +
Sbjct: 160 DLSGSGNGGDPMGFAPPPPSSSPSSSH 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,201,158
Number of Sequences: 28952
Number of extensions: 154317
Number of successful extensions: 461
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)