Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m13
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    28   1.0  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    28   1.0  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   2.3  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   2.3  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    27   3.1  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    27   3.1  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    26   4.0  
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.3  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   5.3  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   9.3  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   9.3  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 15/80 (18%), Positives = 39/80 (48%)
 Frame = +3

Query: 15   MLYKLLNVLWLVVAVSNAIPGTPVIDWAERNYALVKINYEATAYENLIKLKEQVDVHVSW 194
            ++ KL+++   +  +SN +   P+ DW ++  A++   Y+    +++  L       ++ 
Sbjct: 1138 VVQKLISIPAALQRISNPVTRFPLPDWLQKRVAVLNSKYQQKKIDSIFSLAPTNPSTIN- 1196

Query: 195  NVWNGDIGDIAYVFFDEQQV 254
            N    DI D+  V   ++++
Sbjct: 1197 NTKVTDIEDLGSVTHKDKRI 1216


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 379 SQTPTAVIWRRSNTHGW-KTTNPAEERIKLSL 471
           S  P++++ R S+TH W K TN + E + L L
Sbjct: 619 SSLPSSLLNRGSSTHSWEKLTNASTEEVMLPL 650


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 302 HNNINGSPFTV--GVAFPYLLLVKEHVRYVANVAVPYVPTDVNVD 174
           H ++ G  +T   G++  Y+L V E ++   +    +VPT   V+
Sbjct: 716 HQDVGGKDYTTKYGLSMSYILPVLERLKLPPSARAQHVPTTAGVE 760


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -1

Query: 129  NLFL-RAHNCV--RPNRSPACRESRWKRRPPTTKR 34
            NLF  + H CV   PN  P   ES+  R+P  TKR
Sbjct: 1231 NLFRQKLHECVPIAPNPPPIIGESKSTRKPRPTKR 1265


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 45  LVVAVSNAIPGTPVIDWAERNYALVKINYEATAYENLIKL 164
           L+  +S+   GTPV+D+ ++    ++I++  T  +NL+K+
Sbjct: 15  LIDQLSSVTQGTPVLDFIDK----LRIHFYTTIRQNLLKI 50


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -3

Query: 397 PPSVSAILTNTGSLM---EQPSSLQSLTRMLNCPLTITLMVALLLSASPFHTCCSSKNTY 227
           PPS   + T+   L    ++ S   S +     P     M++   +AS  H   SS ++Y
Sbjct: 71  PPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSY 130

Query: 226 AMSPMSP 206
           A+SP SP
Sbjct: 131 AVSPTSP 137


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 644 PARSLQ-SFKTSGYCFEGVVYSIATA 570
           P + L+ +F+  G CF+G + +IATA
Sbjct: 83  PVKELELNFEIKGICFDGKLLAIATA 108


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = -3

Query: 373 TNTGSLMEQPSSLQSLTRMLNCPLTITLMVALLLSASPFHTCCSSKNTYAMSPMSPFH 200
           T +G L+ +P  L SL      P T   +  LLL+AS   T C     Y  +P S FH
Sbjct: 122 TYSGVLLHRPWKLFSLK-----PFTAAFV--LLLAASYLATACFRMLGYLGTPRSRFH 172


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
 Frame = -1

Query: 558 NRTTSAINLARELCLRESCARTHPTRQ-----STQRQFYPLFCRVCCFPAMCIRAAPDD 397
           N+  + INL   LC+  SC   HPT Q     S   Q   + C  C      +   PD+
Sbjct: 232 NQAINTINLL--LCIAVSCLSVHPTIQEYNPRSGLAQSSMVMCYTCYLILSALANRPDE 288


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = -3

Query: 394 PSVSAILTNTGSLMEQPSSLQSLTRMLNCPLTITLMVALLLSASPFHTCCSSKNTYAMS 218
           P +  ++  +G +    S   +L +   CP  +  ++ LL      H CCS+   + +S
Sbjct: 132 PGLLIVMPISGRIAYWTSIGNALAQSYICPQGMESLIKLLPKEKCEHLCCSNPMKFIIS 190


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 120  KINYEATAYENLIKLKEQVDVHVSWNVW 203
            K N  A AYE++ K+ E ++ + S  +W
Sbjct: 945  KSNEAAIAYESVGKISEAIEAYKSAGMW 972


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,480
Number of Sequences: 5004
Number of extensions: 57868
Number of successful extensions: 196
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)