Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m13
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_58111| Best HMM Match : fn3 (HMM E-Value=0)                         32   0.35 
SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)             29   2.4  
SB_20502| Best HMM Match : Ank (HMM E-Value=4.2)                       29   3.2  
SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)                    29   4.3  
SB_40739| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-28)                 29   4.3  
SB_7401| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_24440| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  
SB_21903| Best HMM Match : DUF21 (HMM E-Value=0)                       27   9.9  

>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -3

Query: 397 PPSVSAILTN--TGSLMEQPSSLQSLTRMLNCPLTITLMVALLLSASPFHTCCSS 239
           P  V +ILT   TGS+   P+ +Q+ T +L      +L V  ++SA+P  T  +S
Sbjct: 796 PTQVKSILTTVLTGSMTLMPTIIQNSTEVLQSSAVASLNVTTIVSATPSFTLSAS 850


>SB_58111| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 934

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
 Frame = -2

Query: 374 DQHGIAYGTAVLIAKFDTHVKLPAHNNINGSPFTVGVAFPYLLLVKEHVR-YVANVAVPY 198
           +++G+     ++IA     +  P  +  + S F+  +   + LLV   +  Y+A + +  
Sbjct: 579 EKYGVHKFVQIIIAPGVALIVPPQESQESSSAFSNAILDSWTLLVLMLIFIYIAGITIWA 638

Query: 197 VPTDVNVDLFFELY*IFVSGGLVIYFYERIIAFGPIDHRRAGNRVGNGDHQPQNV 33
           V  +VN +   E    F+ GG++   +   ++F  + +   G + G GD  P++V
Sbjct: 639 VDFEVNPE---EFPGSFLRGGILEGSWFAFVSFTTVGYVNEGGQDGYGDRAPKSV 690


>SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 715

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 253 TCCSSKNTYAMSPMSPFHTFQLT 185
           T C SK TY ++ +SPFH + ++
Sbjct: 391 TLCVSKTTYNLTDLSPFHMYNIS 413


>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
          Length = 772

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 364 PCWSKSQTPTAVIWRRSNTHGWKTTNP 444
           P +++  T TA  W  +NTHGW +  P
Sbjct: 315 PWYARFCTATADDWTATNTHGWSSCAP 341


>SB_20502| Best HMM Match : Ank (HMM E-Value=4.2)
          Length = 396

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +3

Query: 300 VSGQFNMRVKLCNEDGCSISDPVLVKIADTDGGHLAPLEYTWLENNKPGRRED 458
           VSG+    V++    G  ISD V   I D DG H   LEY   E  + G+  D
Sbjct: 139 VSGRHLETVRMLRGAGAKISD-VEYDIEDPDGDHWEWLEYLDSEMERAGKYGD 190


>SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +3

Query: 300 VSGQFNMRVKLCNEDGCSISDPVLVKIADTDGGHLAPLEYTWLENNKPGRRED 458
           VSG+    V++    G  ISD V   I D DG H   LEY   E  + G+  D
Sbjct: 806 VSGRHLETVRMLRGAGAKISD-VEYDIEDPDGDHWEWLEYLDSEMERAGKYGD 857


>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 2322

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 530  QGNFVYGKAAPVHTPLDKVRSDNFILSSAGFV 435
            +GN++YG        LD +  D F LSS+ FV
Sbjct: 2120 EGNYIYGVYDQADKTLDSILKDYFHLSSSVFV 2151


>SB_40739| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-28)
          Length = 327

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
 Frame = -2

Query: 431 FQPCVFERRQMTAVGVCDFDQHGIAYGTAVLIAKFD--THVKLPAHNNINGSPFTVGVAF 258
           F PCVF     T + +               +A F   T V L    N NG+ +TVG+  
Sbjct: 192 FLPCVFMLYAYTRILIVARRHRKEISARLKRMASFSESTDVALAQRGNKNGAMYTVGIIV 251

Query: 257 PYLLLVKEHVRY 222
              LL    V+Y
Sbjct: 252 GIFLLCNSFVQY 263


>SB_7401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 3   RQIKMLYKLLNVLWLVVAVSNAIPGTPVIDWAERNYALVKINYEAT 140
           R++KML +  + LW  +   NA+    V D+ ER +  +   Y +T
Sbjct: 248 RELKMLVRQHSSLWEAINYDNAMKSETVKDFEERVHVRLNPQYYST 293


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 198  VWNGDIGDIAYVFFDEQQVWKGDADSKRATINVIVSGQFNMRVKLC-NEDGCSISDPVLV 374
            +W  DI  +  VFF+ ++V   + D      N +   +F+  + L  N D C I  P+L+
Sbjct: 1357 MWRDDI-TVTVVFFNSEEVRYANGDRAEILSNQM---RFSSSLPLYRNSDNCIIDSPLLL 1412

Query: 375  KIADTDG 395
            +   T+G
Sbjct: 1413 QHPMTNG 1419


>SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1127

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = +3

Query: 180 VHVSWNVWNGDIGDIAYVFFDEQQVWKGDADSKRATINVIVSG-------QFNMRVKLCN 338
           +H+SWN      GD+ YV   + +  + +   + +  NVI+SG       Q  +R +L N
Sbjct: 241 IHLSWNPVPVQQGDLTYVI--QYKTTEEEHQVRTSQDNVILSGLRQFTTYQVRVRAQLNN 298

Query: 339 EDGCSISDPVLVKIADTD 392
           ++    S    V+ AD D
Sbjct: 299 DEVIVTSSWKSVRTADQD 316


>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 39  LWLVVAVSNAIPGTPVIDWAERNYALVKINYEATAYE-NLIK 161
           +WL + + NA  G+ V+DW   +        EA  Y  NL+K
Sbjct: 797 MWLKITIPNAFIGSDVVDWLYTHVEGFMDRREARKYACNLLK 838


>SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 82  GVPGIALETATTNHKTFNNLYNIL 11
           GVP IA   +TTN    NN+Y +L
Sbjct: 458 GVPTIAYGNSTTNSTKKNNIYQVL 481


>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 243  EQQVWKGDADSKRATINVIVSGQFNMRVKLC 335
            EQQV++G++D     IN +V       +++C
Sbjct: 957  EQQVFEGNSDQDTVVINDLVQPLLTQHIRIC 987


>SB_24440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 278 FTVGVAFPYLLLVKEHVRYVANVAVPYVPTDVNVDLFFELY*IFVSGGLVIYF 120
           +T  V   Y+ L   HV ++    + Y P++V V LF  ++ +    G ++YF
Sbjct: 253 YTTCVTPLYIFLSIYHVEFLFKKTLDYNPSEVAVYLFLLIFHVNCVLGPIMYF 305


>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1257

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -2

Query: 515  YGKAAPVHT---PL-DKVRSDNFILSSAGFVVFQPCVFERRQMTAVGVC 381
            YG + P H    PL  KVR++   LS+ G+V   PC++  R +   G C
Sbjct: 1190 YGLSLPSHPAQCPLCAKVRTNPTALSTCGYVFCYPCIY--RYLGQHGCC 1236


>SB_21903| Best HMM Match : DUF21 (HMM E-Value=0)
          Length = 1040

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 295 TLMVALLLSASPFHTCCSSKNTYA 224
           T +V LL +A  FH CC+S   YA
Sbjct: 279 TQLVDLLANALDFHLCCASVCAYA 302


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,412,386
Number of Sequences: 59808
Number of extensions: 468990
Number of successful extensions: 1338
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)