Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m13
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25165.1 68416.m03142 rapid alkalinization factor (RALF) fami...    30   1.1  
At2g39130.1 68415.m04807 amino acid transporter family protein b...    29   2.0  
At4g21770.1 68417.m03150 pseudouridine synthase family protein c...    29   3.5  
At2g34300.1 68415.m04196 dehydration-responsive protein-related ...    28   4.6  
At4g28080.1 68417.m04027 expressed protein                             28   6.1  
At5g56325.1 68418.m07030 hypothetical protein                          27   8.1  
At3g46150.1 68416.m04994 hypothetical protein                          27   8.1  
At2g14500.1 68415.m01623 F-box family protein contains F-box dom...    27   8.1  
At1g27770.2 68414.m03396 calcium-transporting ATPase 1, plasma m...    27   8.1  
At1g27770.1 68414.m03395 calcium-transporting ATPase 1, plasma m...    27   8.1  
At1g14230.1 68414.m01684 nucleoside phosphatase family protein /...    27   8.1  

>At3g25165.1 68416.m03142 rapid alkalinization factor (RALF) family
           protein
          Length = 74

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 123 FLRAHNCVRPNRSPACRESRWKRRPPTTKRLTICTT 16
           +L    C+RPN  P C    +K R P       CTT
Sbjct: 29  YLLLDPCLRPNAPPGCHRQPYKPRTPVNVYSRGCTT 64


>At2g39130.1 68415.m04807 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 550

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 592 SFIPSPPQMGMKPYNKCDKFGKGTLSTGKLRPYTPHS 482
           S +PSP  +G    N   +FG   LS+G +R +TP S
Sbjct: 67  SSVPSPG-IGFLGNNSMTRFGSSFLSSGLIRRHTPES 102


>At4g21770.1 68417.m03150 pseudouridine synthase family protein
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 472

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 123 FLRAHNCVRPNRSPACRESRWKRR 52
           +LR H  V P RSP C E  WK R
Sbjct: 189 YLRVH--VHPKRSPRCYEIDWKSR 210


>At2g34300.1 68415.m04196 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 770

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/32 (31%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 420 CIRAAPDDRRRCLRF*PTRDRLW-NSRPHCKV 328
           C+ + PD  +R +++  +R+++W N+ PH K+
Sbjct: 284 CLVSLPDGYKRSIKWPKSREKIWYNNVPHTKL 315


>At4g28080.1 68417.m04027 expressed protein
          Length = 1660

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/70 (24%), Positives = 36/70 (51%)
 Frame = -3

Query: 418  YSSGAR*PPSVSAILTNTGSLMEQPSSLQSLTRMLNCPLTITLMVALLLSASPFHTCCSS 239
            +SSG R  PS++ + TN  ++ +QPS  +  +     P T +  +++ ++ S   T   +
Sbjct: 1098 FSSGRRTRPSLAKLNTNFMNVTQQPSRSRGKSTNFTSPRTSSNELSISVAGS---TSSPA 1154

Query: 238  KNTYAMSPMS 209
               +  SP++
Sbjct: 1155 SKMFVKSPLN 1164


>At5g56325.1 68418.m07030 hypothetical protein
          Length = 264

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 364 PCWSKSQTPTAVIWRRSNTHGWKTTNPAEERIKLSLRTLSSGVC 495
           PCWS+  +    +     T  W+    AEE  +++   L S +C
Sbjct: 182 PCWSEPSSIPECLTHNLETFKWEHYYGAEEEKEVAAFILRSSIC 225


>At3g46150.1 68416.m04994 hypothetical protein 
          Length = 142

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 99  ERNYALVKINYEATAYENLIKLKEQVDVHVSWNV 200
           +R+ AL+     A  YE  I   E+ D H+SW++
Sbjct: 100 KRHLALLLPLSFAQVYEGFISFYEEEDKHISWDI 133


>At2g14500.1 68415.m01623 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 347

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 376 KSQTPTAVIWRRSNTHGWKTTNPAEERIKLSLRTLSSGV 492
           K+++P  +++     HG    NP E+RI  S+R  S  +
Sbjct: 45  KTKSPWLILFPDEGVHGCVLYNPDEDRIYKSVRDFSGTI 83


>At1g27770.2 68414.m03396 calcium-transporting ATPase 1, plasma
           membrane-type / Ca(2+)-ATPase isoform 1 (ACA1) / plastid
           envelope ATPase 1 (PEA1) identical to SP|Q37145
           Calcium-transporting ATPase 1, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
           ATPase 1) {Arabidopsis thaliana}; identical to cDNA
           envelope Ca2+-ATPase (PEA1) chloroplast gene encoding
           chloroplast protein GI:509809
          Length = 946

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 492 VYGRSFPVDKVPLPNLSHLLYGFIPICGGDGINDA 596
           V  RS P+DK  L  L   ++  +    GDG NDA
Sbjct: 655 VMARSSPMDKHTLVRLLRTMFQEVVAVTGDGTNDA 689


>At1g27770.1 68414.m03395 calcium-transporting ATPase 1, plasma
           membrane-type / Ca(2+)-ATPase isoform 1 (ACA1) / plastid
           envelope ATPase 1 (PEA1) identical to SP|Q37145
           Calcium-transporting ATPase 1, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope
           ATPase 1) {Arabidopsis thaliana}; identical to cDNA
           envelope Ca2+-ATPase (PEA1) chloroplast gene encoding
           chloroplast protein GI:509809
          Length = 1020

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 492 VYGRSFPVDKVPLPNLSHLLYGFIPICGGDGINDA 596
           V  RS P+DK  L  L   ++  +    GDG NDA
Sbjct: 729 VMARSSPMDKHTLVRLLRTMFQEVVAVTGDGTNDA 763


>At1g14230.1 68414.m01684 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to SP|P49961
           Ectonucleoside triphosphate diphosphohydrolase 1 (EC
           3.6.1.5) (Ecto-apyrase) {Homo sapiens}; contains Pfam
           profile PF01150: GDA1/CD39 (nucleoside phosphatase)
           family
          Length = 503

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 75  GTPVIDWAERNYALVKINYEATAY 146
           G PV D+ E NYA +K++   +AY
Sbjct: 104 GKPVFDFGEENYASLKLSPGLSAY 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,596,307
Number of Sequences: 28952
Number of extensions: 314177
Number of successful extensions: 922
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)