Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m12
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0208 + 1780275-1781123                                           32   0.37 
03_03_0280 - 16166962-16167393,16167646-16167770,16168305-161686...    29   3.4  
08_01_0076 - 540886-541527,542173-542754                               24   4.2  
07_01_0698 - 5269329-5269579,5270673-5270928,5271158-5271725,527...    29   4.5  
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    28   6.0  
11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,443...    28   7.9  

>01_01_0208 + 1780275-1781123
          Length = 282

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = -3

Query: 414 LALILKPKVSAVR*RYREFIRPMVHHPFCWFWVRMSPALLMSPLLCPFIVIFSHSSWFTP 235
           L L L+P    ++   R F++  +H P C+F V   P    SP  CP I   S +   T 
Sbjct: 200 LFLTLRPPPFILQGPIRNFVK--IHVPSCYFPVHGCPRSPSSPTGCPTIGELSRADQSTV 257

Query: 234 QKKCNREIARKPQNALTT 181
                +EI     +++ T
Sbjct: 258 TSTIRQEIPEASNSSIIT 275


>03_03_0280 -
           16166962-16167393,16167646-16167770,16168305-16168645,
           16171153-16171313
          Length = 352

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 338 WWTIGLINSRYRYLTAETFGFKINANGTSLKKKQIWTLEPASGNANDSMIY 490
           WW     + R RYL+A  FG ++      +    I  LEP  G  +   +Y
Sbjct: 77  WWLSRSPHRRGRYLSANHFGAEVPNLSAKIVGANIGYLEPDRGRPSQFSLY 127


>08_01_0076 - 540886-541527,542173-542754
          Length = 407

 Score = 24.2 bits (50), Expect(2) = 4.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 461 SGNANDSMIYLRSHLDKYLAVDSFGNVTCESEEKEPGSK 577
           S +AN S  Y  SH + +   ++FG   CE  +  P  K
Sbjct: 65  SASANVSRYYYNSHTELFFPSNTFG--ACERADCAPTFK 101



 Score = 23.0 bits (47), Expect(2) = 4.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 275 GHSNGDINSAGDILTQNQQKGWWTIGLI 358
           G ++GD     D      +K WWT GL+
Sbjct: 21  GGASGD--EEADYCPPTPRKEWWTTGLL 46


>07_01_0698 -
           5269329-5269579,5270673-5270928,5271158-5271725,
           5271757-5272763
          Length = 693

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 221 LHFFCGVNQLECEKITMNGHSNGDIN 298
           LHF CGVN+L    +   G   GD N
Sbjct: 532 LHFICGVNELVSGPVRSLGEKVGDYN 557


>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 284 CCVRSL*SFHTRAGLHRRRNAIARSRENHKMH*LQ 180
           CC RS   F  RAG HRRR  + R R +   H L+
Sbjct: 142 CCDRSAPPFPPRAG-HRRRPRLHRHRHDLPFHALR 175


>11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,
            4430555-4432052,4432199-4432217,4432469-4432675,
            4432814-4433065
          Length = 1363

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 500  HLDKYLAVDSFGNVTCESEEKEPGSKFHISVSDDNSGRWALRNVER 637
            H D    +D  G +   +E+K+ G K +I +S + SGR     +ER
Sbjct: 1295 HFDVTFDIDGNGVLNVTAEDKDTGRKNNIIIS-NRSGRLNKEEIER 1339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,435,606
Number of Sequences: 37544
Number of extensions: 331781
Number of successful extensions: 861
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)