Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m12
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57025| Best HMM Match : Fascin (HMM E-Value=0)                     120   1e-27
SB_29783| Best HMM Match : PA14 (HMM E-Value=5e-05)                    30   2.0  
SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13)               29   2.7  
SB_43150| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_19214| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)                   28   6.1  
SB_42397| Best HMM Match : rve (HMM E-Value=0.0007)                    28   6.1  
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)                    28   6.1  
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)                28   8.1  
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)                 28   8.1  
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_57025| Best HMM Match : Fascin (HMM E-Value=0)
          Length = 504

 Score =  120 bits (289), Expect = 1e-27
 Identities = 58/115 (50%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
 Frame = +2

Query: 341 WTIGLINSRY-RYLTAETFGFKINANGTSLKKKQIWTLEPASGNANDSMIYLRSHLDKYL 517
           W IGL+N    +YLTAETFGFK+N++G SL+KKQ W+LE   G A    IYL+SHL +YL
Sbjct: 247 WNIGLMNDNSSKYLTAETFGFKLNSDGVSLRKKQTWSLEQVDGEA----IYLKSHLGRYL 302

Query: 518 AVDSFGNVTCESEEKEPGSKFHISVSDDNSGRWALRNVERGYFLGSSSDKLTCTA 682
             D  GN+ CE+EE+E  +KF + + D   G+WAL++V   YF G++ D+L C A
Sbjct: 303 TADPKGNLCCEAEERESNAKFTVEIKD---GKWALKSVHGAYF-GANGDQLKCVA 353


>SB_29783| Best HMM Match : PA14 (HMM E-Value=5e-05)
          Length = 1395

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
 Frame = +2

Query: 302 AGDILTQNQQKGWWTIGLINSRYRYLTAETFGFKINANGTSLKKKQIWTLEPASGNANDS 481
           A +++T   QK + T G   S+Y+ +T E    KI  NGT       + LE      ND+
Sbjct: 329 ATEVVTVYMQKLYQTFG---SKYKLITIENVEKKIFENGTR------YLLEL---TLNDT 376

Query: 482 MIYLRSHLDKYLAVDSFGNVTCESEEKEPGSKFHIS--VSDDNSGRWA---LRNVER 637
           +     HL  Y+   +  +  C  E  +   K  ++  ++  N G W    L N+ R
Sbjct: 377 VANSEEHLSNYVYQPTNSSELCSPESSQWDRKAIVTFVITVKNQGPWVHLFLENIAR 433


>SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13)
          Length = 660

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 218 RLHFFCGVNQLECEKITMNGHSNGDINSAGDILTQNQQ 331
           R H   G+  LE E++T  GHS GD+    D+   +++
Sbjct: 94  RHHAKAGIYNLEEEELTHLGHSLGDVGKFDDVRLSDEE 131


>SB_43150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 616

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
 Frame = +2

Query: 302 AGDILTQNQQKGWWTIGLINSRYRYLTAETFGFKINANGTSLKKKQIWTLEPASGNANDS 481
           A +++T   +K + T G   S+Y+ +T E    KI  NGT       + LE      ND+
Sbjct: 329 ATEVVTVYMEKLYQTFG---SKYKLITIENVEKKIFENGTR------YLLEL---TLNDT 376

Query: 482 MIYLRSHLDKYLAVDSFGNVTCESEEKEPGSKFHISVSDDNSGRWA---LRNVER 637
           +     HL  Y+   +  +  C  E  +   K  ++V   N G W    L N+ R
Sbjct: 377 VANSEVHLSNYVYQPTNSSELCSPESSQWDRKAIVTVK--NQGPWVHLFLENIAR 429


>SB_19214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 461 SGNANDSMIYLRSHLD-KYLAVDSFGNVTCESEEKEPGSKFHISVSDDNSGRWA 619
           +G   + +  +   L+ K +AVD+ GNV C+S + +  +K  +++   N+  WA
Sbjct: 288 TGCTKEDLFEMEKKLEVKLVAVDALGNVMCDSGKYK--TKARVTIPCHNNHAWA 339


>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
          Length = 346

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = -3

Query: 573 LPGSFSSDSQVTLPKLSTARYLSKCDLK*IMLSLAFPEAGSRVQICFFFRLVPLALILKP 394
           +P   SSD        +T  +L   D+K  + S++FP++  R ++   +     A  L+ 
Sbjct: 154 VPEELSSDGGPEFTAKATEDFLRTWDVKQRLSSVSFPQSNGRAEVAEAWAAKEDA--LRT 211

Query: 393 KVSAVR*RYREFIRPM 346
           ++S      RE  RP+
Sbjct: 212 RISRTTESLREHARPL 227


>SB_42397| Best HMM Match : rve (HMM E-Value=0.0007)
          Length = 729

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = -3

Query: 573 LPGSFSSDSQVTLPKLSTARYLSKCDLK*IMLSLAFPEAGSRVQICFFFRLVPLALILKP 394
           +P   SSD        +T  +L   D+K  + S++FP++  R ++   +     A  L+ 
Sbjct: 600 VPEELSSDGGPEFTAKATEDFLRTWDVKQRLSSVSFPQSNGRAEVAEAWAAKEDA--LRT 657

Query: 393 KVSAVR*RYREFIRPM 346
           ++S      RE  RP+
Sbjct: 658 RISRTTESLREHARPL 673


>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
          Length = 1026

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = -3

Query: 573  LPGSFSSDSQVTLPKLSTARYLSKCDLK*IMLSLAFPEAGSRVQICFFFRLVPLALILKP 394
            +P   SSD        +T  +L   D+K  + S++FP++  R ++   +     A  L+ 
Sbjct: 834  VPEELSSDGGPEFTAKATEDFLRTWDVKQRLSSVSFPQSNGRAEVAEAWAAKEDA--LRT 891

Query: 393  KVSAVR*RYREFIRPM 346
            ++S      RE  RP+
Sbjct: 892  RISRTTESLREHARPL 907


>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
          Length = 815

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -3

Query: 540 TLPKLSTARYLSKCDLK*IMLSLAFPEAGSRVQICFFFRLVPLALILKPKVSA--VR*RY 367
           T+P+ ST  +   CD      S+   +   +VQ  ++ RL P  + LKPKV+A  VR +Y
Sbjct: 78  TVPQKSTRDHF--CDYSVAAESIDLEKLLQKVQDAYY-RLHPHLIYLKPKVTAKEVRTKY 134

Query: 366 REF 358
           + +
Sbjct: 135 KAY 137


>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
          Length = 475

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 207 SRSRDCISSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTSRKDGGP 347
           SR    IS++V  +  +K+S+     MAT     T+SP  ++  GGP
Sbjct: 223 SREAPPISTSVEDAEMLKKSRNLPAWMATGGQATTASPPVTKPVGGP 269


>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 544 LRIRGKGTRQQVPHQCLRRQQRPLGAA*RRAW 639
           L+  G+G RQ+ P+  LR+++RP     +R W
Sbjct: 775 LQEEGQGQRQEAPYN-LRKRKRPSSPTHKRRW 805


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,827,414
Number of Sequences: 59808
Number of extensions: 383537
Number of successful extensions: 1203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)