Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m12
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    25   0.51 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.67 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.7  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 564 SFSSDSQVTLP-KLSTARYLSKCDLK*IMLSLAFPEAGSRVQICF 433
           +F+ +  V L  K  T RYLS C+   + LSL+  E  ++V+I F
Sbjct: 14  AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTE--TQVKIWF 56


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 425 LKKKQIWTLEPASGNANDSMIYLRSHLDKYLAVDSFGNVTCESEEKEPGSK 577
           +K ++I  LE      +  +  LRSHLDK+L   S            PGSK
Sbjct: 13  VKDEKIVELEALLCRRDAEIQELRSHLDKFLQCASLKLAFEPRRNPGPGSK 63


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 598 RQQRPLGAA*RRAWLFPGLQ 657
           +++RP G   RRA LF GLQ
Sbjct: 222 QEERPKGINGRRASLFCGLQ 241


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 598 RQQRPLGAA*RRAWLFPGLQ 657
           +++RP G   RRA LF GLQ
Sbjct: 217 QEERPKGINGRRASLFCGLQ 236


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
 Frame = +2

Query: 377 LTAETFGFKINANGTSLKKKQIW-----TLEPASGNANDSMIYLRS 499
           LT    G  +  NG  +  +  W     T++PA  NA  +  YL+S
Sbjct: 373 LTLTLPGIGVVYNGDEIGMEDRWFTYQETVDPAGCNAGPAKYYLKS 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,189
Number of Sequences: 438
Number of extensions: 3480
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)