Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m12
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17690.1 68415.m02048 F-box family protein contains F-box dom...    33   0.18 
At1g27100.1 68414.m03303 expressed protein  contains Pfam profil...    31   0.94 
At5g47690.1 68418.m05887 expressed protein                             28   6.6  
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    27   8.8  
At1g08985.1 68414.m01002 expressed protein                             27   8.8  

>At2g17690.1 68415.m02048 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 421

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 464 GNANDSMIYLRSHLDKYLAVDSFGNVTCESEEKEPGSK--FHISVSDDNSGRW 616
           GN ND     ++H   ++  D+ GNV+C+  E++P     F +  +D+   +W
Sbjct: 296 GNGNDDFFAAQAHRFIHVLHDNLGNVSCKPFERDPPKTIGFKVYKNDEELLKW 348


>At1g27100.1 68414.m03303 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 519

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +2

Query: 347 IGLINSRYRYLTAETFGFKINANGTSLKKKQIWTLEPASGNANDSMIYLRSHLDKYLAVD 526
           I + NS  +YLTA+     +  N     K   WT+EP   + +  +I L+S   KYL   
Sbjct: 236 IRMRNSHNKYLTADDDEETVTQNRNGSTKNARWTVEPVRDSFH--VIRLKSCYGKYLTAS 293

Query: 527 S 529
           +
Sbjct: 294 N 294


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
 Frame = +2

Query: 470  ANDSMIYLRSHLDKYLAVDSFG----------NVTCESEEKEPGSKFHISVSDDNSGRWA 619
            A++  ++L S +DK +++DS            +++    +K   SK  I+ SD     WA
Sbjct: 1265 ASEDELHLESDMDKNVSLDSHDENSDQEKMLESISPRKRKKSLSSKLKITESD-----WA 1319

Query: 620  LRNVERGYFLGSSSDKL 670
            L +VER    G    KL
Sbjct: 1320 LTDVERSRSAGGGDSKL 1336


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
           to pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, ABC1 protein [Nicotiana
           plumbaginifolia] GI:14331118; contains Pfam profile
           PF00005: ABC transporter
          Length = 1406

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +2

Query: 308 DILTQNQQKGWWTIGLINSRYRYLTAETF--GFKINANGTSLKKK 436
           +IL++  Q+ +W    +   YRY+TA+ F  GFKI+  G +++ +
Sbjct: 429 EILSKKDQEQYWANPEL--PYRYVTAKKFEEGFKIHHFGRAMRSQ 471


>At1g08985.1 68414.m01002 expressed protein 
          Length = 101

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 497 SHLDKY-LAVDSFGNVTCESEEKEPGSKFHISVSDDNSGRWA-LRNVERGYFLG 652
           SH +K  L  D   N+   +    P     + + D+ +  W  LR  +RGYF+G
Sbjct: 17  SHDNKLILPRDKVENIVRSTGVPVPRMGIQVEILDNTNSYWVNLRQSQRGYFIG 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,836,828
Number of Sequences: 28952
Number of extensions: 263835
Number of successful extensions: 730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)