Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10m08
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 359 e-100
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 358 e-100
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 358 e-100
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.49
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 2.0
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 2.0
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 2.6
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.5
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 3.5
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 27 3.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.5
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 26 6.0
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 8.0
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 359 bits (884), Expect = e-100
Identities = 162/225 (72%), Positives = 188/225 (83%)
Frame = +1
Query: 28 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 207
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 208 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 387
V I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 388 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 567
YKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQ 180
Query: 568 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 702
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NV
Sbjct: 181 VMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNV 225
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 358 bits (881), Expect = e-100
Identities = 161/225 (71%), Positives = 188/225 (83%)
Frame = +1
Query: 28 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 207
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 208 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 387
V I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 388 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 567
YKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQ 180
Query: 568 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 702
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NV
Sbjct: 181 VMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNV 225
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 358 bits (880), Expect = e-100
Identities = 161/225 (71%), Positives = 188/225 (83%)
Frame = +1
Query: 28 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 207
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 208 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 387
V I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 388 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 567
YKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQ 180
Query: 568 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 702
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NV
Sbjct: 181 VMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNV 225
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.49
Identities = 35/118 (29%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Frame = +2
Query: 353 SQSTVSPLRRLSTSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIPSS*TLQLRR 532
S ST SP+ STSC + + T + SA T S S +PS+ T
Sbjct: 63 SLSTGSPVEITSTSCTTDTSASTPIITEST----SSTSSASTTGSSSSPLPSTST----S 114
Query: 533 LWTSSSLSP-GTCV*SREAVTWGVWAPSCPARDIPAPSTLCTSRTPRDTPSPRG*TTC 703
TS+S+ P G +T V S + IP P T +S P P T+C
Sbjct: 115 CTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSC 172
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -3
Query: 282 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 127
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +1
Query: 223 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 402
K++ K+ +R + +P + +I + F + G + +I K LC
Sbjct: 13 KRKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCS 72
Query: 403 VK-RVATGPKNVPYLVTHDGR 462
V T PKN Y+V GR
Sbjct: 73 NPIDVHTDPKNTEYIVASGGR 93
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 699 VVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 610
V+ P EG LD+H+ A ++L GH+
Sbjct: 904 VLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 489 QSQRFHPVRHCNYED 533
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 547 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 651
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -3
Query: 702 HVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLDEVHNLRS 523
H P GEG R V N + + +H+P+ S+ +T PGLK + + +
Sbjct: 287 HNTTPDGEGKYRSV---QNGRALNYVSSFNSDSHSPKDYISQSYTNEPGLKKESADSFNN 343
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 289 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 465
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 466 IR 471
++
Sbjct: 1778 LK 1779
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 660 LDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPGLKLD 544
LD+H V S+ D A T + AS DH VPG K +
Sbjct: 174 LDLHQVAQVAQSVI--DNAAT--IAASLDHCAVPGRKFE 208
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 384 SLLRGDTVDCESALNIID*TKQ 319
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,713
Number of Sequences: 5004
Number of extensions: 69763
Number of successful extensions: 206
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -