Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m07
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    24   1.4  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   1.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   1.8  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 419 IWSTSLRSAATLLTIANSLSRPFSK 493
           I+S  L +  TLL I +S+ RP+ K
Sbjct: 25  IYSFLLLTTLTLLVILSSIDRPYLK 49


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -1

Query: 486 NGRDKLFAI-VNNVAAERRLVDQIHICLIHNHCIEQYVVFVKNALV 352
           +G D   A+ V  V  E  +  +  IC IH    E Y +F K  L+
Sbjct: 248 SGLDSFMALTVMQVLKEMAMTGKTVICTIHQPSSEVYSMFDKLLLM 293


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -1

Query: 486 NGRDKLFAI-VNNVAAERRLVDQIHICLIHNHCIEQYVVFVKNALV 352
           +G D   A+ V  V  E  +  +  IC IH    E Y +F K  L+
Sbjct: 248 SGLDSFMALTVMQVLKEMAMTGKTVICTIHQPSSEVYSMFDKLLLM 293


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,366
Number of Sequences: 336
Number of extensions: 3450
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)