Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m07
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0633 - 30492742-30492987,30493082-30494194                       29   2.7  
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412...    29   3.6  
06_03_0151 + 17270688-17270698,17271149-17271281,17271548-172715...    29   4.8  
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677...    29   4.8  
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634...    28   6.3  

>02_05_0633 - 30492742-30492987,30493082-30494194
          Length = 452

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 98  CNEKKAASAVSWRLAKRSCCICVRRRPQRRC 190
           C+ +KAA AV  + A R+C  C+RRR +  C
Sbjct: 3   CSSEKAAGAVGGKAA-RACDSCLRRRARWYC 32


>09_06_0016 -
           20240358-20240797,20241040-20241131,20241132-20241250,
           20241398-20241561,20241664-20241757,20242048-20242080,
           20242361-20242478,20242712-20242812,20242882-20242962,
           20243138-20243335,20243411-20243545,20243662-20243667,
           20243727-20243805,20243845-20243896,20244328-20244388,
           20244475-20244532,20245137-20245225,20246305-20246799
          Length = 804

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +1

Query: 430 ESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 585
           E   G+NV+  CE    A+  +  +S  +V    + W  + L+ L  ++  +
Sbjct: 182 EPEAGANVVKSCESLFAALVGLTAVSLHLVETFLIKWRKEKLTQLTVYVFQM 233


>06_03_0151 +
           17270688-17270698,17271149-17271281,17271548-17271589,
           17271706-17271815,17271957-17272035,17272114-17272287,
           17272386-17272466,17272761-17272988,17273067-17273402,
           17273501-17273586,17273642-17273783,17274596-17274687,
           17274770-17274904,17275142-17275304,17275393-17275482,
           17275568-17275753,17276109-17276141,17276700-17276762,
           17276839-17276901,17276983-17277042,17277258-17277410,
           17277530-17277613,17278434-17278610,17278685-17278791,
           17278858-17279071,17279158-17279261,17279926-17280061,
           17280191-17280316,17280682-17280792,17280968-17281066,
           17281367-17281633,17281707-17281822,17281853-17282084,
           17282597-17282664,17282682-17282807,17282980-17283040
          Length = 1495

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 221 LLFISKILQNV-LRTTNATSLLILLNSNRSKPYL*KKYTNTWCLKTRAFLTNT 376
           + FIS +L+N+ L T +   +L  L        + K+  N W L  +AFL  T
Sbjct: 823 MYFISLVLENLALSTDDNEDILYCLKGWNQALEMAKQKNNQWALYAKAFLDRT 875


>02_05_0003 -
           24867053-24867145,24867264-24867437,24867673-24867735,
           24868108-24868198,24869579-24869673,24870471-24870668,
           24871475-24871648,24872335-24872439,24872645-24872737,
           24873688-24873690,24874776-24874844,24875208-24875265,
           24875810-24875918,24876603-24876714,24877992-24878204,
           24878214-24878546
          Length = 660

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 319 MKKVYK-HLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNVINYC 465
           ++KVY+   + +NEG+  +H+  F  + MY+ Y +          ++  C
Sbjct: 303 LEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYESMMNLAEEIVTRC 352


>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
            17466161-17466346
          Length = 1831

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +1

Query: 415  VNLVDESAFGSNVINYCEQF--ITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLN 588
            V +VDE  +GS +  Y E+   I   FE F  ++  +   P++ E  N+ +LL+ + +L 
Sbjct: 856  VPIVDEEFYGSKLRGYVEELRAIGVQFE-FANANLHIADQPLSME--NVILLLQWIKDLR 912

Query: 589  LIGIEI 606
             IG+++
Sbjct: 913  SIGVQL 918


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,848,160
Number of Sequences: 37544
Number of extensions: 322304
Number of successful extensions: 800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)