Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m04
         (456 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20210.1 68417.m02954 terpene synthase/cyclase family protein...    28   3.4  
At5g40960.1 68418.m04977 expressed protein                             27   7.9  
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR...    27   7.9  

>At4g20210.1 68417.m02954 terpene synthase/cyclase family protein
           (+)-delta-cadinene synthase isozyme XC14,
           Gossypiumarboreum, PIR2:S68366
          Length = 600

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +3

Query: 249 CCNGDCLAVVVL-DRNQLQNTDMEVLE-SLEYTSDNVELL 362
           C +GD   ++ L +  QL+ T   ++E +L +TS N+ELL
Sbjct: 188 CISGDAKGLLALYEAAQLRTTTEYIMEEALSFTSSNLELL 227


>At5g40960.1 68418.m04977 expressed protein
          Length = 68

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 425 LYTIFLVILVVIINYHTY 372
           LY +FL++ +V++N H Y
Sbjct: 50  LYGLFLILFLVVLNVHVY 67


>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1195

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 297 LQNTDMEVLESLEYTSDNVELLCKKVCVIVDNYNKYYQ 410
           L +T  ++ E + Y S   ELL KKV +++D+ +   Q
Sbjct: 299 LSDTYNDITEEMTYASVKDELLKKKVLLVLDDVSSKKQ 336


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,302,417
Number of Sequences: 28952
Number of extensions: 213717
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)