Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m02
         (712 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.46 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.46 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.46 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.46 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.46 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.5  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   3.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   4.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.5  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   9.9  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   9.9  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   9.9  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   9.9  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 540 WDRRNPITWNELEYIGGNDSNLIPN 614
           W+  N + WNE EY G  D  + PN
Sbjct: 60  WNDYN-LKWNESEYGGVKDLRITPN 83


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 540 WDRRNPITWNELEYIGGNDSNLIPN 614
           W+  N + WNE EY G  D  + PN
Sbjct: 60  WNDYN-LKWNESEYGGVKDLRITPN 83


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 540 WDRRNPITWNELEYIGGNDSNLIPN 614
           W+  N + WNE EY G  D  + PN
Sbjct: 60  WNDYN-LKWNESEYGGVKDLRITPN 83


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 540 WDRRNPITWNELEYIGGNDSNLIPN 614
           W+  N + WNE EY G  D  + PN
Sbjct: 60  WNDYN-LKWNESEYGGVKDLRITPN 83


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 540 WDRRNPITWNELEYIGGNDSNLIPN 614
           W+  N + WNE EY G  D  + PN
Sbjct: 60  WNDYN-LKWNESEYGGVKDLRITPN 83


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/48 (25%), Positives = 18/48 (37%)
 Frame = -3

Query: 521 HFKIAGLVYGRWTKMNIHPXXXXXXXXXXXIWLPVVQRFVHSAFITKH 378
           H    G VYG+ + +  H             WL   +RF  S  + +H
Sbjct: 318 HIPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELQRH 365


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 409 GSSIPLLSPNTELRSFEPAPQSV 341
           G  +  LS   ELR FEPA  +V
Sbjct: 427 GELLHALSDKPELRPFEPAVTAV 449


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 62  CRRVNHSKQCN**CNHYDYT 3
           C+R+ + KQC   C   DY+
Sbjct: 788 CKRIYNEKQCCKNCARVDYS 807


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 450 RDLNIAYLASSCSKVRPFRFYHQ 382
           +D+N  YL  S S  RP   Y Q
Sbjct: 18  KDMNARYLPPSLSDTRPMLPYPQ 40


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 346 FAVPVQTIAILCLVIKAE 399
           F +  QTI I+C+++++E
Sbjct: 608 FLLITQTIFIICVIVQSE 625


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 303 DDFDLIKQRVVPHTLCGAGSN 365
           DD  L+K     H+ C  GSN
Sbjct: 23  DDVLLVKSEPQLHSPCATGSN 43


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 384 QTQNCDRLNRHRKV 343
           +  NCD+L + RKV
Sbjct: 85  KVNNCDKLEKPRKV 98


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 597 SNLIPNPGDSLCD 635
           SNL+ NP  ++CD
Sbjct: 949 SNLVFNPDQNVCD 961


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 646 TRLLSHNESPGFGIKFESLP 587
           TRL + +  P F I+F  +P
Sbjct: 410 TRLNNESRKPSFVIQFSHIP 429


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 414 NNWKPDTLYLNLYQPVYRM 470
           N W PDT ++N  Q  + +
Sbjct: 121 NIWVPDTFFVNEKQSYFHI 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,839
Number of Sequences: 336
Number of extensions: 4143
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)