Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m02
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57943| Best HMM Match : SCP (HMM E-Value=5.70048e-42)               29   2.8  
SB_55388| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_30883| Best HMM Match : F5_F8_type_C (HMM E-Value=9.4e-30)          29   4.9  
SB_57401| Best HMM Match : fn3 (HMM E-Value=2e-09)                     28   6.5  
SB_19802| Best HMM Match : fn3 (HMM E-Value=0)                         28   6.5  
SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)              28   6.5  
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_57943| Best HMM Match : SCP (HMM E-Value=5.70048e-42)
          Length = 632

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +3

Query: 315 LIKQRVVPHTLCGAGSNDRN-SVFGDK--SGMDEPLNNWKPDTLYLNLYQPVYRMNV-HF 482
           L ++R + H+    G +  N ++F  K  S  +E  N W  ++ Y N  +P Y+ N  HF
Sbjct: 546 LARERTLKHSTRERGEDGENLAMFTGKYESAGEEATNMWYEESAYYNFNRPGYQSNTGHF 605


>SB_55388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = -2

Query: 270 YTVETCIALWQRPPRILNRELDIYNRLICKHCGTRRRECYRHCGANKNFHL*NIYIDGPS 91
           ++ ++ I L   PP       D+Y  + C  C     EC + CG     H  +    G S
Sbjct: 309 FSNDSAITLSWLPPNNTGGRTDLYYLVECFTCNGNGTECVKACGGTVTQHGTSARFSGLS 368

Query: 90  AGT 82
           A T
Sbjct: 369 AFT 371


>SB_30883| Best HMM Match : F5_F8_type_C (HMM E-Value=9.4e-30)
          Length = 679

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = -2

Query: 261 ETCIALWQRPPRILNRELDIYNRLICKHCGTRRRECYRHCGANKNFHL*NIYIDGPSAGT 82
           ++ + L   PP       D++ ++ C  C      C + CG     H  +  + G SA T
Sbjct: 318 DSVVTLSWSPPNNTGGRSDVFYQVECSTCNGNGTVCVKACGGTVTQHWTSARVSGLSAFT 377


>SB_57401| Best HMM Match : fn3 (HMM E-Value=2e-09)
          Length = 111

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = -2

Query: 270 YTVETCIALWQRPPRILNRELDIYNRLICKHCGTRRRECYRHCGANKNFH 121
           ++ ++ I L   PP       D+Y  + C  C     EC + CG     H
Sbjct: 13  FSNDSAITLSWLPPNNTGGRTDLYYLVECFTCNGNGTECVKACGGTVTQH 62


>SB_19802| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1075

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 442 KYSVSGFQLFKGSSIPLLSPNTELRSFEPAPQSVCGTTLCLIRS 311
           +Y VSG Q +      +LS N + +S    P +  GTTL  + S
Sbjct: 733 EYDVSGLQAYARYLFRVLSCNVKDKSLLSEPANATGTTLATVPS 776


>SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)
          Length = 325

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 57  PAVRSHGYLSLPTARQY 107
           P +  HGYLS+P AR Y
Sbjct: 15  PHISGHGYLSIPPARNY 31


>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = +3

Query: 114 FKDGNFYWPHNGDNIPDAACRNAYKSVYYKYRALDLESGAAAATAQYMFQQYMEYASVAG 293
           FK G+F  P    +  +A  RN   +  Y  RA   +  AA   A    ++ +   ++A 
Sbjct: 376 FKKGDF--PSAQKHYTEAIKRNPEDAKLYSNRAATFQKLAAFNLALEEAKEGLRAVAMAS 433

Query: 294 PNYDDFDLIKQRVVPHTLCGAGSNDRNSVFGDK-SGMDEP 410
               D + +KQR +      A +  RNS    K +GM +P
Sbjct: 434 RPPTDPEEVKQRAMADPEIQAFTKSRNSRQNSKANGMRDP 473


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,163,857
Number of Sequences: 59808
Number of extensions: 528279
Number of successful extensions: 1301
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)