Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m01
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0319 - 2148788-2148892,2149474-2149557,2149643-2149723,215...    34   0.056
05_01_0205 + 1475628-1475969,1477446-1477642,1478476-1478611,147...    30   1.2  

>02_01_0319 -
           2148788-2148892,2149474-2149557,2149643-2149723,
           2150303-2150480,2150811-2150954,2151048-2151094,
           2151353-2151409,2151566-2151664,2151867-2151989,
           2152083-2152205,2152594-2152707,2152972-2153160,
           2153412-2153578,2153904-2153988,2155431-2155628,
           2155978-2156175
          Length = 663

 Score = 34.3 bits (75), Expect = 0.056
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
 Frame = +3

Query: 87  RKMANTSDITP--DIVVSAQINSGDEGVLHFIIEDEYYLKKRGVGAHIIKVASSPXLXLL 260
           R   N+S I    D ++S Q+N+G  G  H   E + Y+  +G  AH++  A +  L L+
Sbjct: 539 RTYENSSSIRKACDFILSKQLNTGGWGESHVSNETKVYVNIKGDRAHVVNTAWA-MLTLI 597

Query: 261 YKNAY----SAVSCGNYSILCNLVQNGEY--DLNAXMFNCA 365
           Y        + + C    ++   ++ GE+    +   FNC+
Sbjct: 598 YAGQMERDPTPLHCAAKELINMQLETGEFPQQEHVGCFNCS 638


>05_01_0205 +
           1475628-1475969,1477446-1477642,1478476-1478611,
           1478706-1479178,1479287-1479404,1479762-1479911,
           1480039-1480125,1480536-1480829
          Length = 598

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 417 PDNNKTDAAVNTSSPKRAVETENDDDXDE 503
           PD  K    V+T  PK  ++T+ND D DE
Sbjct: 249 PDELKGKIIVSTKPPKEYLQTKNDADADE 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,430,394
Number of Sequences: 37544
Number of extensions: 200505
Number of successful extensions: 463
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)