Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m01
         (503 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)         29   1.6  
SB_49197| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)                    27   8.8  

>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
          Length = 282

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 408 IYRPDNNKTDAAVNT--SSPKRAVETENDDDXDE 503
           I +PD  K   AVN+  S PK+  + E D D DE
Sbjct: 124 IKKPDVQKRPLAVNSDKSPPKKVAKVEKDSDSDE 157


>SB_49197| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 336 RIRRFAPNCTKYYSCRTTLQN 274
           ++RR   NC +YY  R  LQN
Sbjct: 25  KLRRLLQNCDRYYKLRRLLQN 45


>SB_857| Best HMM Match : Mago_nashi (HMM E-Value=0)
          Length = 900

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/105 (17%), Positives = 37/105 (35%)
 Frame = +3

Query: 189 YYLKKRGVGAHIIKVASSPXLXLLYKNAYSAVSCGNYSILCNLVQNGEYDLNAXMFNCAE 368
           YY K   V  H +K  S     L   + ++    G  +++C+       D +      ++
Sbjct: 580 YYEKAVAVNEHALKRCSETRELLHQADEFAKAIAGATAVMCSSSHQSSQDRHTSQSTSSK 639

Query: 369 IKLNKGQMLFXTKIYRPDNNKTDAAVNTSSPKRAVETENDDDXDE 503
            K  K ++   +        + D+           + ++DDD  E
Sbjct: 640 YKTKKAKLGGRSSSSNSKRKRLDSLGKHRQLPHLSDEDSDDDMPE 684


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,626,868
Number of Sequences: 59808
Number of extensions: 248136
Number of successful extensions: 566
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)