Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10m01
         (503 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42070.1 68418.m05121 expressed protein similar to unknown pr...    28   3.1  
At1g11420.1 68414.m01312 agenet domain-containing protein contai...    27   5.4  
At3g56150.1 68416.m06241 eukaryotic translation initiation facto...    27   7.2  
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ...    27   9.5  

>At5g42070.1 68418.m05121 expressed protein similar to unknown
           protein (dbj|BAA92898.1)
          Length = 164

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 450 TSSPKRAVETENDDDXD 500
           +SSP   VET+NDDD D
Sbjct: 49  SSSPSSVVETDNDDDND 65


>At1g11420.1 68414.m01312 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 604

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 66  IKVNAIIRKMANTSDITPDIVVSAQINSGDEGVLHFII 179
           +K+N+ I K   +SD TP++V ++  N+ +    H I+
Sbjct: 367 LKLNSYINKTVLSSDRTPNVVKNSASNAEENHAKHTIM 404


>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
           subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
           identical to SP|O49160 Eukaryotic translation initiation
           factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
           {Arabidopsis thaliana}
          Length = 900

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 342 NAXMFNCAEIKLNKGQMLFXTKIYRPDNNKTDAAVNTSSPKRAVETENDDDXDE 503
           N+   N  + KL K       K+Y  D NK   A      K+  + ++DDD D+
Sbjct: 137 NSKALNSMKQKLKKNN-----KLYEDDINKYREAPEVEEEKQPEDDDDDDDDDD 185


>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1116

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +3

Query: 294 NYSILCNLVQNGEYDLNAXMFNCAEIKLNKGQMLFXTKIYRPDNNKTDAAVNTSSPKRAV 473
           N  IL N   + ++  +    N  + K  K   L+  K  R  + KT+    TS  + ++
Sbjct: 56  NVEILSNNQLDSQFPSSRVFGNNGKEK-EKKVFLYNWKTQRTSSEKTEGEDETSWIQASL 114

Query: 474 ETENDDDXD 500
             ++DDD D
Sbjct: 115 NDDDDDDDD 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,236,244
Number of Sequences: 28952
Number of extensions: 161987
Number of successful extensions: 337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)