Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10l20
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      29   0.86 
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    28   1.1  
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos...    26   6.0  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   6.0  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    26   6.0  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    25   8.0  
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.0  

>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 214 FWCTERLFHTSKPICCTLDQITIINYKLYTHR 119
           F C E  FHTS+ +  T D+IT+   +L   R
Sbjct: 320 FLCVEEPFHTSRNLANTADEITMKGIQLEFRR 351


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 334 SKRQEILVKLEADKKLTE-NILFDENWQLSQFWYDEKTVHSLVKVIDKVLDNRG 492
           S+R+E+ +K     KL + NI+FD N   S     E    +L+++ID V +NRG
Sbjct: 217 SEREELFIK-----KLEQCNIIFDFNDPSSDLASKEIKREALLQMIDYVSENRG 265


>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
           Mms2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/14 (57%), Positives = 14/14 (100%)
 Frame = +3

Query: 201 SVHQNKIFNLRINC 242
           SVH+N+I++L+I+C
Sbjct: 51  SVHENRIYSLKIHC 64


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/52 (23%), Positives = 32/52 (61%)
 Frame = -3

Query: 503 SATLPLLSNTLSITLTRECTVFSSYQN*LSCQFSSNKIFSVNFLSASSFTRI 348
           SAT  +  +++S +++ + ++ SSY + +S    ++    ++ +++SS+T I
Sbjct: 785 SATPTITQSSISTSVSSQSSMNSSYSSPISSNSVTSSTSIISSIASSSYTSI 836


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 10/111 (9%)
 Frame = +1

Query: 322 YAEQSKRQEILVKLEADKKLTENILFDENWQLSQFWYDEKTVHSLVKVIDKVLDNRGKVA 501
           + E     E+ +    + K T  +L D N    Q++Y+ +  +       KVLD+   + 
Sbjct: 224 FLETRAEYELYLSKMEEAKSTIYLLLDRNPDNHQYYYNLQRAYGYEDASGKVLDSAEWLN 283

Query: 502 LIS----------CPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDYIFYD 624
           L S          CPT  +PL++  GD     +  Y R+    G   +F D
Sbjct: 284 LYSQLAKRYPKSECPTR-LPLEKLEGDEFLTHVDLYLRKKLKRGIPSVFVD 333


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +1

Query: 538 RQIGDRGTVTLLEYDRRFEVHGPDYIFYDYNNPKEVPPDVHHSYDLVVADP 690
           R +G        +Y R F+   PD +   YN+P  +   V+     V+ +P
Sbjct: 181 RSLGSLSITANPKYKRGFQPLLPDVVQAVYNDPASIEQFVNDKTAAVIVEP 231


>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/19 (42%), Positives = 17/19 (89%)
 Frame = +1

Query: 364 EADKKLTENILFDENWQLS 420
           +A+++L++NI+ DE+W L+
Sbjct: 21  QAEEELSKNIVTDEHWSLA 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,885
Number of Sequences: 5004
Number of extensions: 56661
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)