Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10l20
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1140 + 30699054-30699533,30699627-30699708,30700265-30700428    113   1e-25
02_04_0597 - 24198112-24198462,24199249-24199389,24200322-242005...    30   2.1  
11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142     29   4.8  
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945...    29   4.8  
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762...    28   6.3  
10_01_0152 - 1754113-1754286,1754396-1754551,1755273-1756194,175...    28   8.3  
03_02_0082 - 5515019-5515087,5515178-5515285,5516032-5516148,551...    28   8.3  

>03_05_1140 + 30699054-30699533,30699627-30699708,30700265-30700428
          Length = 241

 Score =  113 bits (272), Expect = 1e-25
 Identities = 63/151 (41%), Positives = 90/151 (59%), Gaps = 5/151 (3%)
 Frame = +1

Query: 268 DEDVPTLSAETFAALQEFYAEQSKRQEILVKLEADKKLTENILFDENWQLSQFWYDEKTV 447
           ++D P LSA    AL+EF  EQ +        E ++      L  E+W+LSQFWYDE+T 
Sbjct: 17  EDDRPQLSAAAAEALREFLLEQGRDGGE----EGEEGGGGVELVAEDWRLSQFWYDERTA 72

Query: 448 HSLVKVIDKVLDNRGK-----VALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDY 612
            +L + + +++   G      VA ++CPTL+  LK    D  T  LLEYD RF  +G D+
Sbjct: 73  RALAEEVARLVSLSGPASSAAVACVACPTLYTYLKTSSPDV-TAQLLEYDVRFGQYGGDF 131

Query: 613 IFYDYNNPKEVPPDVHHSYDLVVADPPFLSE 705
            FYDYN P+E+P  + H+Y +VVADPP+LS+
Sbjct: 132 TFYDYNQPEELPAAMKHAYRIVVADPPYLSK 162


>02_04_0597 - 24198112-24198462,24199249-24199389,24200322-24200537,
            24200626-24201561,24201655-24201816,24202026-24202304,
            24202399-24203171,24206142-24207363
          Length = 1359

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 331  QSKRQEILVKLEADKKLTENILFDENWQLSQF 426
            +S++ E +VKL ADKK   + L +   QLSQF
Sbjct: 1156 RSEKDEQIVKLTADKKNLHDRLHEAETQLSQF 1187


>11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142
          Length = 751

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 558 PSVSNLSFQGHKECGARNQC 499
           PS S+LS +G  ECG+ N C
Sbjct: 507 PSTSDLSTRGSVECGSMNSC 526


>04_04_0217 -
           23693124-23693535,23693965-23694052,23694428-23694503,
           23694729-23694787,23694853-23694934,23695533-23696577,
           23696700-23696998
          Length = 686

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 277 VPTLSAETF---AALQEFYAEQSKRQEILVKLEADKKLTENI 393
           +PT   E F   AAL EF  E    Q +L K + +KKL + I
Sbjct: 57  LPTRDQEQFDKTAALTEFLQEHRLEQTVLFKRKKEKKLEQTI 98


>08_02_0386 -
           16575636-16575698,16575799-16575858,16575947-16576239,
           16576361-16576517,16576601-16576948,16577047-16577177,
           16577417-16577882,16578425-16579132
          Length = 741

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 298 TFAALQEFYAEQSKR---QEILVKLEADKKLTENILFDENWQLS 420
           TF   Q+F+   ++R       ++LEA K   E  L D+ W+LS
Sbjct: 507 TFREYQDFHDSHARRTTENNFRIQLEAKKHRLEKELKDQEWRLS 550


>10_01_0152 -
           1754113-1754286,1754396-1754551,1755273-1756194,
           1756364-1756414,1757540-1757946,1758918-1759067,
           1759178-1759333,1760175-1761041
          Length = 960

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 418 SQFWYDEKTVHSLVKVIDKVLDNRGKVALIS 510
           S+ +YDEKT  + +  +++V++ R   ALIS
Sbjct: 76  SEGYYDEKTELAFIMFMERVMELRDPAALIS 106


>03_02_0082 -
           5515019-5515087,5515178-5515285,5516032-5516148,
           5516263-5516382,5518038-5518868
          Length = 414

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = +1

Query: 415 LSQFWYDEKTVHSLVKVIDKVLDN----RGKVALISCP-TLFVPLKRQI 546
           L Q +  EKT+HS  K I K+ DN    R K+ L+     LF  L+RQI
Sbjct: 270 LVQSFNAEKTLHSAWKEISKLRDNVSSKRSKLQLLKQKLKLFAILRRQI 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,352,141
Number of Sequences: 37544
Number of extensions: 315195
Number of successful extensions: 708
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)