Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10l20
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              29   3.7  
SB_27224| Best HMM Match : RNase_P_p30 (HMM E-Value=5.9)               29   4.9  
SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)             28   6.4  
SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)                    28   6.4  

>SB_52615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1154

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 464 TLTRECTVFSSYQN*LSCQFSSNKIFSVNFLSASSF 357
           T+T  C VF    N LSC+     IF V FL+   F
Sbjct: 853 TMTFTCFVFFDMFNALSCRSQEKSIFQVGFLTNRMF 888


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +1

Query: 484 NRGKVALISCPTLFVPLKRQIGDRGTVTLLEYDRRFEVHGPDYIFYDYNNPKEVPPDVHH 663
           +R  V +++ P +      +I DR  V + + D  + +H P  +++  +     PP V+H
Sbjct: 531 DRKNVIVVNRPPMIYHPPPEIYDRPDVVVHQPD--YVIHRPSVVYHQPSVVVHRPPIVYH 588

Query: 664 SYDLVVADPP 693
              +V   PP
Sbjct: 589 QPPVVFHQPP 598


>SB_27224| Best HMM Match : RNase_P_p30 (HMM E-Value=5.9)
          Length = 489

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -1

Query: 367 LLALQGFLVFYFVQHRIPVKQQMSLLTMWARLHLLPLHKKM*QLILRLNILFWCTERLFH 188
           LL ++  L F     R+     + LLT+   LHLL +HK +  L +R  +      ++ H
Sbjct: 58  LLTVRKRLTFTHGAQRLTFTHGLHLLTVRKGLHLLTVHKGLHLLTVRKGLHLLTVRKILH 117


>SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)
          Length = 576

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 544 IGDRGTVTLLEYDRRFEVHGPDYI--FYDYNNPKEVPPDVHHSYDL 675
           +G R  ++L+  D RF+     YI  ++DYN+ K+  P    SY +
Sbjct: 456 VGIRYQLSLMRGDIRFKPDSAKYIPVYFDYNSSKKEVPKFLSSYTI 501


>SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)
          Length = 475

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 616 FYDYNNPKEVPPDVHHSY 669
           F D+  PK+ PP +HHSY
Sbjct: 65  FSDFPIPKDYPPFMHHSY 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,656,072
Number of Sequences: 59808
Number of extensions: 402401
Number of successful extensions: 1005
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)