Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10l18
(251 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g... 31 0.14
At4g03550.1 68417.m00486 glycosyl transferase family 48 protein ... 31 0.14
At5g36870.1 68418.m04417 glycosyl transferase family 48 protein ... 29 0.32
At3g07160.1 68416.m00853 glycosyl transferase family 48 protein ... 29 0.32
At2g31960.1 68415.m03905 glycosyl transferase family 48 protein ... 29 0.43
At2g13680.1 68415.m01508 glycosyl transferase family 48 protein ... 29 0.43
At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-g... 29 0.43
At3g59100.1 68416.m06589 glycosyl transferase family 48 protein ... 29 0.56
At5g13000.1 68418.m01490 glycosyl transferase family 48 protein ... 28 0.75
At3g14570.1 68416.m01845 glycosyl transferase family 48 protein ... 28 0.75
At1g06490.1 68414.m00688 glycosyl transferase family 48 protein ... 28 0.75
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 27 1.3
At1g06820.1 68414.m00727 carotenoid isomerase, putative similar ... 27 1.3
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 27 2.3
At5g04630.1 68418.m00468 cytochrome P450, putative cytochrome P4... 26 3.0
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 26 4.0
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 26 4.0
At2g45460.1 68415.m05654 forkhead-associated domain-containing p... 25 5.3
At2g38420.1 68415.m04719 pentatricopeptide (PPR) repeat-containi... 25 7.0
At5g49900.1 68418.m06179 expressed protein contains Pfam domain ... 25 9.2
At3g57370.1 68416.m06386 transcription factor IIB (TFIIB) family... 25 9.2
>At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-glucan
synthase, putative similar to callose synthase 1
catalytic subunit GI:13649388 from [Arabidopsis thaliana]
Length = 1768
Score = 30.7 bits (66), Expect = 0.14
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 71 AFVTLAMGRKSLRDPLKTTAHFGHPE 148
+FVTL G++ L +PLK H+GHP+
Sbjct: 1222 SFVTL--GQRVLANPLKVRMHYGHPD 1245
>At4g03550.1 68417.m00486 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1780
Score = 30.7 bits (66), Expect = 0.14
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 71 AFVTLAMGRKSLRDPLKTTAHFGHPE 148
+FVTL G++ L +PLK H+GHP+
Sbjct: 1229 SFVTL--GQRVLANPLKVRMHYGHPD 1252
>At5g36870.1 68418.m04417 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1862
Score = 29.5 bits (63), Expect = 0.32
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 71 AFVTLAMGRKSLRDPLKTTAHFGHPE 148
+FVT+ G++ L +PLK H+GHP+
Sbjct: 1315 SFVTI--GQRVLANPLKVRFHYGHPD 1338
>At3g07160.1 68416.m00853 glycosyl transferase family 48 protein
similar to glucan synthase GB:AAD11794 [Filobasidiella
neoformans var. neoformans]
Length = 1931
Score = 29.5 bits (63), Expect = 0.32
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 71 AFVTLAMGRKSLRDPLKTTAHFGHPE 148
+FVTL G++ L PLK H+GHP+
Sbjct: 1383 SFVTL--GQRVLAKPLKIRMHYGHPD 1406
>At2g31960.1 68415.m03905 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase;
contains non-consensus splice aite AC at exon 33
Length = 1959
Score = 29.1 bits (62), Expect = 0.43
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 71 AFVTLAMGRKSLRDPLKTTAHFGHPE 148
+FVT+ G++ L PLK H+GHP+
Sbjct: 1403 SFVTI--GQRVLASPLKVRFHYGHPD 1426
>At2g13680.1 68415.m01508 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1923
Score = 29.1 bits (62), Expect = 0.43
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 71 AFVTLAMGRKSLRDPLKTTAHFGHPE 148
+FVT+ G++ L PLK H+GHP+
Sbjct: 1369 SFVTI--GQRVLASPLKVRFHYGHPD 1392
>At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-glucan
synthase 1 nearly identical to callose synthase 1
catalytic subunit [Arabidopsis thaliana] GI:13649388
Length = 1922
Score = 29.1 bits (62), Expect = 0.43
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 71 AFVTLAMGRKSLRDPLKTTAHFGHPE 148
+FVT+ G++ L PLK H+GHP+
Sbjct: 1366 SFVTI--GQRVLASPLKVRFHYGHPD 1389
>At3g59100.1 68416.m06589 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1934
Score = 28.7 bits (61), Expect = 0.56
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +2
Query: 68 AAFVTLAMGRKSLRDPLKTTAHFGHPE 148
++FVT+ G++ L +PL+ H+GHP+
Sbjct: 1379 SSFVTI--GQRILANPLRVRFHYGHPD 1403
>At5g13000.1 68418.m01490 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1889
Score = 28.3 bits (60), Expect = 0.75
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 71 AFVTLAMGRKSLRDPLKTTAHFGHPE 148
+FVT+ G++ L +PL+ H+GHP+
Sbjct: 1444 SFVTI--GQRLLANPLRVRFHYGHPD 1467
>At3g14570.1 68416.m01845 glycosyl transferase family 48 protein
contains similarity to glucan synthases
Length = 1973
Score = 28.3 bits (60), Expect = 0.75
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 71 AFVTLAMGRKSLRDPLKTTAHFGHPE 148
+FVT+ G++ L +PL+ H+GHP+
Sbjct: 1424 SFVTI--GQRLLANPLRVRFHYGHPD 1447
>At1g06490.1 68414.m00688 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1933
Score = 28.3 bits (60), Expect = 0.75
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 71 AFVTLAMGRKSLRDPLKTTAHFGHPE 148
+FVT+ G++ L +PL+ H+GHP+
Sbjct: 1379 SFVTI--GQRVLANPLRVRFHYGHPD 1402
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 83 LAMGRKSLRDPLKTTAHFGHPEGLKHKIRRPYNKHEDK 196
L G K+ R+ +K HFG G+ H +PY +H+ +
Sbjct: 137 LLRGPKNSREAVK---HFGPAPGVPHSNTKPYVRHKGR 171
>At1g06820.1 68414.m00727 carotenoid isomerase, putative similar to
carotenoid isomerase from Lycopersicon esculentum
[gi:19550437]; contains Pfam profile: PF02032 Phytoene
dehydrogenase related enzyme
Length = 595
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 86 AMGRKSLRDPLKTTAHFGHPEGLKHKIRRPYN 181
A+GRK P TT HF P L +I R Y+
Sbjct: 151 AVGRKMEVIPDPTTVHFHLPNNLSVRIHREYD 182
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 83 LAMGRKSLRDPLKTTAHFGHPEGLKHKIRRPYNKHEDKLIQ 205
L G K+ R+ +K HFG G+ H +PY + K I+
Sbjct: 85 LLRGPKNTREAVK---HFGPAPGVPHSHTKPYVRQTGKKIE 122
>At5g04630.1 68418.m00468 cytochrome P450, putative cytochrome P450
77A3p, Glycine max, PIR:T05948
Length = 509
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -2
Query: 250 FFFVYRYNLLQINFTLNQFVFVFVVRSSNLVFQPLGMAKMCRSF*WISQ*F 98
F+F R N L++ L QFV F + L + LG K SF ++ F
Sbjct: 236 FYFKERKNSLELRRKLVQFVVGF-IEKRRLAIRNLGSDKTASSFAYLDTLF 285
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 25.8 bits (54), Expect = 4.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 100 IIERSIKNYGTFWPSRGA-ETQDSKTLQQTRRQIDSM*NLFVINY 231
I+ R++KN T P GA + + SK L+Q R I LF+ +Y
Sbjct: 398 IVRRAVKN-STVVPGGGAIDMEISKYLRQHSRTIAGKSQLFINSY 441
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 25.8 bits (54), Expect = 4.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 162 LCFSPSGWPKCAVVFN 115
LCF P+ P C VVF+
Sbjct: 123 LCFGPTTMPDCVVVFD 138
>At2g45460.1 68415.m05654 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 915
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 22 SNIEHHEADYPAVCRGRVCHTRYGQKIIERSIKNY 126
S +EHHE+DY ++ H + ++I E + K++
Sbjct: 261 SIVEHHESDYLSISTEISLHLQEIKQIKESTAKSF 295
>At2g38420.1 68415.m04719 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 444
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -2
Query: 250 FFFVYRYNLLQINFTLNQFVFVFVVRSSNLVFQPLGMAKMCR 125
FF + + + +TLN + V V + +L P + K CR
Sbjct: 122 FFKIPNFRCVPSAYTLNALLLVLVRKRQSLELVPEILVKACR 163
>At5g49900.1 68418.m06179 expressed protein contains Pfam domain
PF04685: Protein of unknown function, DUF608
Length = 957
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 86 AMGRKSLRDPLKTTAHFGHPEGLKHKIRRPYNKH 187
A G K L + + HF + EG+++++ Y+ H
Sbjct: 513 AFGTKLLEEGEENIGHFLYLEGIEYRMWNTYDVH 546
>At3g57370.1 68416.m06386 transcription factor IIB (TFIIB) family
protein contains Pfam profile: PF00382 transcription
factor TFIIB repeat
Length = 360
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 129 AVVFNGSLNDFLPIASVTNAATTNSRIISFM 37
A + NGS NDFL + + N+ T + F+
Sbjct: 103 AKLMNGSSNDFLSLGTSQNSETITASSDEFL 133
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,751,719
Number of Sequences: 28952
Number of extensions: 104503
Number of successful extensions: 246
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,070,560
effective HSP length: 62
effective length of database: 10,275,536
effective search space used: 215786256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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