Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10l12
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0305 - 2181727-2184793,2185635-2185945                           29   4.3  
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556...    29   4.3  
07_03_0902 - 22435692-22436156,22436684-22436923,22437228-224373...    28   7.5  
01_05_0291 - 20515206-20516262,20516961-20517313                       27   9.9  

>07_01_0305 - 2181727-2184793,2185635-2185945
          Length = 1125

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +1

Query: 526 TDYDTEDEERVNTFNSRKRRVV----AKRAFNSKSKKIPIG 636
           +DYD  ++ R      +K+R+V    +++   SK  K P+G
Sbjct: 297 SDYDKRNKRRYTRLKKKKKRIVVSNFSRKNLGSKGNKFPVG 337


>04_04_1107 -
           30954647-30954769,30955052-30955141,30955309-30955617,
           30955732-30955842,30955945-30956379,30956452-30956610,
           30957044-30957994,30959016-30959483
          Length = 881

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 289 VEAFTKYHKMNGGDEDIAMHKARKALE 369
           +E F K HK NGG  +    KA++ +E
Sbjct: 683 LEIFNKTHKFNGGTGEFVSEKAKRIVE 709


>07_03_0902 - 22435692-22436156,22436684-22436923,22437228-22437349,
            22437441-22437587,22437753-22437882,22437981-22438116,
            22438223-22438428,22438644-22438844,22438999-22439157,
            22439781-22439858,22440453-22440542,22440625-22440777,
            22440873-22440991,22441190-22441328,22441422-22441525,
            22441944-22441989,22442087-22442252,22442356-22442383,
            22442460-22442610,22442686-22442829,22442912-22443013,
            22443566-22444093
          Length = 1217

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 299  LQSIIK*TAATKTLLCIKLEKRSKKSTLK*IH 394
            LQS+++   A K   C+K EK SK S  K IH
Sbjct: 940  LQSVMRGCLARKKYKCLKEEKDSKASHRKVIH 971


>01_05_0291 - 20515206-20516262,20516961-20517313
          Length = 469

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 8/126 (6%)
 Frame = +1

Query: 250 YNEKMPPRAKKLFVEAFTKYHKMNGGDE--DIAMHKARKALEEKY---VKINTLKNSWIP 414
           YN+  PP  K+   +   ++HK+N   +  + A  KAR+     Y   + I+     ++ 
Sbjct: 218 YNKTTPPLRKRNLKQCKDRWHKINRWTDLFECAYVKARRIFTSGYSNQMWIDAAHKFYVD 277

Query: 415 RKAAYEIVRXXXXXXXXXXXXXTKTKS-NDRLNN--ENTSTDYDTEDEERVNTFNSRKRR 585
                ++               +K K+ ND L N  +  S   + + EE  +TF+   +R
Sbjct: 278 DNKEAKLGPFVLMEVWKICREVSKWKTYNDNLRNARKRKSFHLEGDSEEADDTFDEMPKR 337

Query: 586 VVAKRA 603
            + ++A
Sbjct: 338 PMGQKA 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,233,657
Number of Sequences: 37544
Number of extensions: 206668
Number of successful extensions: 473
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)