Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10l08
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    50   3e-07
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    33   0.037
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    28   1.1  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    28   1.4  
SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyce...    27   1.8  
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    27   1.8  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   9.9  

>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 27/79 (34%), Positives = 41/79 (51%)
 Frame = +2

Query: 224 YDGVHFLRAGLLYKKIQVPGQTLPSESIVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTG 403
           YD   F   G+ +K++     T+P  S+V+EFID  EE  E     ++ VHC  G+ RTG
Sbjct: 238 YDKKTFENVGIRHKEMYFEDGTVPELSLVKEFIDLTEEVEE---DGVIAVHCKAGLGRTG 294

Query: 404 YMVCRYLMHTLGIAPQEAI 460
            ++  YL++       E I
Sbjct: 295 CLIGAYLIYKHCFTANEVI 313


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 33.1 bits (72), Expect = 0.037
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 353 PGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRF-EK--ARGH 487
           P + + VHC  G  RTG ++C YL+   G+  ++++  + EK   RGH
Sbjct: 121 PLLTLVVHCKAGKGRTGTVICSYLVAFGGLTAKQSLELYTEKRMVRGH 168


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 371 VHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGHKIERQNYVQ 514
           VHC  GI+R+  +V  YLM       +EA++   + R       N+++
Sbjct: 129 VHCFAGISRSVTLVAAYLMKENNWNTEEALSHINERRSGISPNANFLR 176


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +2

Query: 143 DVWTTEQIVKQNPSIGAIIDLTNTSKYY---DGVHFLRAGLLYKKIQVPGQ 286
           + W++E+  +Q+  I  +I + NTS  Y   +     + GL+Y+KI  P +
Sbjct: 237 ETWSSEKRKRQSSLIPDLITMKNTSSSYSLEELTSVQQMGLVYEKIVFPSR 287


>SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 200

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 248 AGLLYKKIQ--VPGQTLPSESIVQEFIDTVEEFTE 346
           AG L  ++   +P  TLP + IVQ  +D   EFT+
Sbjct: 142 AGFLKMRVAPTMPALTLPRDKIVQGVVDPAVEFTK 176


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 657 WNNATDRLQSKRSKRSISFDSLEEAQQF 574
           W+ A+D+++     R   FDS E AQ+F
Sbjct: 23  WDEASDQVKGYGGNRYKKFDSYEAAQEF 50


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 534 YYLHFLTNTLFYFQIVALLLAN 599
           YYL+  T  +FY  +  LLL+N
Sbjct: 390 YYLYRATKDVFYLHVGELLLSN 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,202
Number of Sequences: 5004
Number of extensions: 55447
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)