Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10l08
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0584 - 4762476-4762613,4763986-4764075,4765048-4765146,476... 81 6e-16
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 80 1e-15
05_01_0120 - 828834-831143 38 0.005
12_01_0219 - 1651833-1651987,1652172-1652471,1652889-1652967,165... 30 1.5
11_01_0217 - 1698721-1698875,1699122-1699421,1699840-1699918,169... 30 1.5
10_08_0904 + 21464762-21467479 30 1.5
11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928 28 5.9
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686 28 5.9
05_03_0043 - 7702940-7703077,7703361-7703420,7703562-7703612,770... 28 5.9
02_03_0101 + 15233783-15234601 28 7.7
>12_01_0584 -
4762476-4762613,4763986-4764075,4765048-4765146,
4766032-4766154,4766243-4766405,4767307-4767356,
4767826-4767942,4769477-4769683,4769763-4769900,
4771212-4771274,4771358-4771441,4771933-4772084,
4772219-4772357,4772814-4772924
Length = 557
Score = 81.4 bits (192), Expect = 6e-16
Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Frame = +2
Query: 29 PARWHNYLQCGQVIKDSNLICFKTPLQPELFAYVTSEEDVWTTEQIV----KQNPSIGAI 196
P W + G+ I ++ K PL E F ++++Q+V K IG +
Sbjct: 82 PQGWLDCPGSGEPI--DRIVPSKVPLD-ETFNESVPAGKRYSSKQVVNKQRKAGRDIGLV 138
Query: 197 IDLTNTSKYYDGVHFLRAGLLYKKIQVPGQ-TLPSESIVQEFIDTVEEFTEKCPGM---- 361
IDLTNT++YY + R G Y KI G+ +P V F+ V F ++
Sbjct: 139 IDLTNTTRYYSPTEWTRQGTKYVKIACKGRDAVPDNESVNTFVYEVMAFLDRQKQSRNPK 198
Query: 362 LVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGHKIERQNYVQ 514
+ VHCTHG NRTG+M+ YLM T + EA+N F + R I + +Y+Q
Sbjct: 199 YILVHCTHGHNRTGFMIVHYLMRTQLSSVTEALNIFAQRRPPGIYKNDYIQ 249
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 80.2 bits (189), Expect = 1e-15
Identities = 46/116 (39%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Frame = +2
Query: 185 IGAIIDLTNTSKYYDGVHFLRAGLLYKKIQVPGQ-TLPSESIVQEFIDTVEEFTE----- 346
IG +IDLTNT++YY + R G+ + KI G+ +P V F+ V F +
Sbjct: 163 IGLVIDLTNTTRYYSPAEWTRQGIKHVKIPCKGRDAVPDNESVNWFVYEVMMFLDRQKQS 222
Query: 347 KCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGHKIERQNYVQ 514
K P ++ VHCTHG NRTG+M+ YLM T EAIN F K R I +++Y++
Sbjct: 223 KNPKYIL-VHCTHGHNRTGFMIIHYLMRTQVSCVAEAINIFAKRRPPGIYKRDYIE 277
>05_01_0120 - 828834-831143
Length = 769
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 239 FLRAGLLYKKIQVPGQTLPSESIVQEFIDTVEEFTE-KCPGMLVGVHCTHGINRTGYMVC 415
+ ++ L+Y+ + + Q P+E I D + F + + G V VHC G++R+ +V
Sbjct: 185 YFKSDLVYRTLWL--QDSPTEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI 242
Query: 416 RYLMHTLGIAPQEAINRFEKARG 484
YLM G + +A + ARG
Sbjct: 243 AYLMWREGQSFDDAFQLVKAARG 265
>12_01_0219 -
1651833-1651987,1652172-1652471,1652889-1652967,
1653047-1653111,1653236-1653288,1653666-1654084
Length = 356
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = +2
Query: 251 GLLYKKIQVPGQTLPSESIVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMH 430
GL ++ VP + E+++ ++ E V VHC G++R+ ++ YLM
Sbjct: 91 GLRVTRMAVPLRDTEEENLLDHLEPCLDFIDEGRKEGNVLVHCFAGVSRSATIIVAYLMR 150
Query: 431 TLGIAPQEAINRFEK 475
T + +EA+ ++
Sbjct: 151 TEQKSLEEALESLKE 165
>11_01_0217 -
1698721-1698875,1699122-1699421,1699840-1699918,
1699998-1700062,1700187-1700239,1700654-1701072
Length = 356
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = +2
Query: 251 GLLYKKIQVPGQTLPSESIVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMH 430
GL ++ VP + E+++ ++ E V VHC G++R+ ++ YLM
Sbjct: 91 GLRVTRMAVPLRDTEEENLLDHLEPCLDFIDEGRKEGNVLVHCFAGVSRSATIIVAYLMR 150
Query: 431 TLGIAPQEAINRFEK 475
T + +EA+ ++
Sbjct: 151 TEQKSLEEALESLKE 165
>10_08_0904 + 21464762-21467479
Length = 905
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Frame = +2
Query: 272 QVPGQTLPSESIVQEFID-TVEEFTEKCPGMLVGVHCTHGINRTGY-----MVCRYLMHT 433
Q+ GQ + E + E+I T+ + KC M + + + + M+C Y +H
Sbjct: 616 QIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHG 675
Query: 434 LGIAPQEAINRFEKARGHKI 493
LG+ EA+ FE+ + +
Sbjct: 676 LGV---EALRMFERMQKENV 692
>11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928
Length = 839
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +2
Query: 77 SNLICFKTPLQPELFAYVTSEEDVWTTEQIVKQNPSIGAIIDLTNTSKYYDGVHFLR 247
SN++C L E +++VT W Q++K+N I + ++ + +K GV+ L+
Sbjct: 197 SNMLC---QLDKEKYSHVTKAS--WGEAQLIKRNTGIPSKQEILDVAKEVGGVYQLK 248
>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
Length = 959
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 6/25 (24%)
Frame = -2
Query: 455 LPAAQYPGCALN------ICTPCNR 399
+PA Q+PGC +N +CT CN+
Sbjct: 236 IPACQHPGCKINGRTRIMVCTGCNK 260
>05_03_0043 -
7702940-7703077,7703361-7703420,7703562-7703612,
7705355-7705408,7707260-7707325,7707552-7707629,
7708568-7708970,7710492-7710493,7711076-7711078
Length = 284
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 305 CFQTAKSGQVLEFFCITGPPAKSAHHHN 222
C T+ +L+F PP +HHHN
Sbjct: 103 CITTSLGSNMLDFSNTAAPPELRSHHHN 130
>02_03_0101 + 15233783-15234601
Length = 272
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 59 GQVIKDSNLICFKTPLQPELFAYVTSEEDV-WTTEQIVKQNPSIGAIIDL 205
GQV+ D ++ K LF V DV W TEQ+V + +G ++D+
Sbjct: 14 GQVLDDMEVVEMKY-----LFGKVLMPSDVSWDTEQLVIPDEHVGKLLDM 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,204,522
Number of Sequences: 37544
Number of extensions: 353695
Number of successful extensions: 860
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -