Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10l08
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   1.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.1  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +2

Query: 83  LICFKTPLQPELFAYVTSEEDVWTTEQIV--KQNPSIGAIIDLTNTSKYYDGVHFLR 247
           ++C    L   L+ Y+TS  D W +  +V  K  P  G   DL    K     HF++
Sbjct: 7   ILCGIAVLFLALYYYLTSTFDFWKSRGVVGPKPVPFFGTTKDLILVKK--STAHFVK 61


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = +1

Query: 304 HRSRIY*HGRRIYRKVSRHVGGRALHTRH*SHRLHGVQIFNAHPGYCAAGS 456
           H+ ++    R + R++ +      LH  H  H LHG+         C  G+
Sbjct: 110 HKEQLSREQRFLRRRLEQLTNQTGLHGLHGLHGLHGLSSSAPTGSSCGPGA 160


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 439 TQGVH*ISAHHVTGAINAVCAMHAHQHAGTLFCKFFYR 326
           T G   +S  H++ +  A+   HA   A    C++ Y+
Sbjct: 296 TTGTKCVSGEHLSVSGGALNDCHAEVVARRCLCEYLYK 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,550
Number of Sequences: 438
Number of extensions: 3652
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)