Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10l07
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 32 0.50
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828... 29 2.7
11_06_0247 - 21669299-21669348,21669673-21670012,21670110-216701... 29 3.5
12_01_0685 + 5848758-5849162,5849282-5849341,5849803-5849919,585... 29 4.7
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720... 29 4.7
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 28 6.2
03_02_0747 + 10888358-10888481,10888529-10888609,10889011-108892... 28 8.1
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 256 LPFTLILSLIKSSTM*WKKVTNDWLVNSLRKHSKISKGNKLNDTIW 393
L L++SLIK + WK+ ND +N+ H + +G K T W
Sbjct: 131 LSLVLLVSLIKEAFEDWKRFQNDMSINN--AHVDVLQGQKWETTPW 174
>01_06_0905 +
32880368-32880633,32882439-32882568,32882704-32882894,
32883625-32883852,32884062-32884224,32884343-32884416,
32884484-32884601,32884722-32884788,32885152-32885223,
32885350-32885513
Length = 490
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +2
Query: 32 CTNFFLSTVKKLQLQFINKNTIKTPNSKLCEGDKLSRLLSKSNI*KRRSSETHCRFGF 205
CT S+ +QL+F N +T T + C D+ + L S + S + C + F
Sbjct: 122 CTGCPSSSGLNIQLEFFNPDTSSTSSKIPCSDDRCTAALQTSEAVCQTSDNSPCGYTF 179
>11_06_0247 -
21669299-21669348,21669673-21670012,21670110-21670199,
21670280-21670339,21670564-21670856,21671176-21671245,
21671623-21671970,21673188-21673318,21673418-21673901,
21674839-21675558
Length = 861
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/97 (26%), Positives = 42/97 (43%)
Frame = +3
Query: 171 EDQVKLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGNKRLARQLVEKA 350
E+Q +L A S +R PV+ PTV+ T + +K N + E ++ R +
Sbjct: 490 EEQARLNAASSFSSRTEAPVE-PTVAGTLGETLE-ANSKYGNKLDENYENKMTRTVEAAR 547
Query: 351 FENIKRKQIERYHLASTPEEKAKIELNPKDILYKAVE 461
++ RK + LA EKA+ L + K E
Sbjct: 548 HADLVRKLEWKLQLAQKKIEKAERVLGKVETALKPTE 584
>12_01_0685 +
5848758-5849162,5849282-5849341,5849803-5849919,
5850013-5850110,5850470-5851020,5851118-5851221,
5851298-5851387
Length = 474
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 109 IWSFDSVLVNELKLEFFNRR 50
+W F SVLVNE K + NRR
Sbjct: 340 LWEFPSVLVNEGKTDTLNRR 359
>09_02_0589 +
10969195-10969325,10971135-10971607,10971894-10972032,
10972645-10972722,10972886-10973055,10973199-10973467,
10973655-10973781,10973964-10974035,10975084-10975273,
10975480-10975879
Length = 682
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +3
Query: 609 FPEQFAWELLEASN---NTGKVVKRN 677
FPE+FAWE ++ SN NT +++ N
Sbjct: 224 FPEKFAWEGVKCSNSSSNTARIISLN 249
>01_01_0953 -
7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 108 IRNYAKATSFPDYYQNPIFRK 170
++N +KA SFP+ Y+NP K
Sbjct: 567 VQNLSKALSFPESYENPYLMK 587
>03_02_0747 +
10888358-10888481,10888529-10888609,10889011-10889227,
10889350-10889460,10889615-10889660,10889744-10889853,
10889926-10890429,10891466-10891594,10891934-10892230,
10892322-10892680,10892968-10893016,10893124-10893184,
10893429-10893578,10893659-10893796,10894525-10894805,
10895005-10895050
Length = 900
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 414 AKIELNPKDILYKAVENCKPLLQLQP 491
AK+E++P+DI+Y +EN +P+ QP
Sbjct: 407 AKVEVSPRDIVY--MENAEPINGEQP 430
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,472,428
Number of Sequences: 37544
Number of extensions: 345907
Number of successful extensions: 919
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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