Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc10l07
(697 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28921| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_6907| Best HMM Match : PAN (HMM E-Value=0.019) 33 0.29
SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17) 33 0.29
SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06) 32 0.39
SB_22681| Best HMM Match : PAN (HMM E-Value=0.0027) 30 1.6
SB_18837| Best HMM Match : Extensin_2 (HMM E-Value=1.7) 30 1.6
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2) 29 2.7
SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_28538| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_34658| Best HMM Match : SUI1 (HMM E-Value=1e-06) 28 8.3
SB_12951| Best HMM Match : Radial_spoke_3 (HMM E-Value=0) 28 8.3
>SB_28921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 519 VPGPITEKRSLFLAIKWLLETTDEKE--RTVHFPEQFAWELLEASNN 653
VP P+ R F AIKW+++ ++ + ++ A ELL+A NN
Sbjct: 1 VPSPLNPIRRRFFAIKWIIDAARDQSGPKNARMHKKLAKELLDAYNN 47
>SB_6907| Best HMM Match : PAN (HMM E-Value=0.019)
Length = 324
Score = 32.7 bits (71), Expect = 0.29
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 176 SSETHCRFGFEEPSNCTCEATY 241
SS CR G+E+P CTC+ Y
Sbjct: 130 SSHRACRIGYEDPFRCTCQRNY 151
>SB_29300| Best HMM Match : GFO_IDH_MocA (HMM E-Value=2.1e-17)
Length = 634
Score = 32.7 bits (71), Expect = 0.29
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 176 SSETHCRFGFEEPSNCTCEATY 241
SS CR G+E+P CTC+ Y
Sbjct: 433 SSHRACRIGYEDPFRCTCQMNY 454
>SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06)
Length = 659
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 189 IADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEK 311
++D K+RA P KP + SSV D L+ ++ +HV+ K
Sbjct: 220 LSDKMNKDRAQTPPKPSPPLDLSSVDLDELIQRIRHHVLVK 260
>SB_22681| Best HMM Match : PAN (HMM E-Value=0.0027)
Length = 329
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 191 CRFGFEEPSNCTCEATY 241
CR G+EEP CTC Y
Sbjct: 143 CRIGYEEPYRCTCGKNY 159
>SB_18837| Best HMM Match : Extensin_2 (HMM E-Value=1.7)
Length = 626
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 553 NNDLFSVIGPGTWYVIPPLLMGCNCNNGLQ 464
N F + PG WY PP L C+ NG Q
Sbjct: 85 NRSSFKTLSPGEWYTEPP-LGSCHRGNGKQ 113
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -1
Query: 553 NNDLFSVIGPGTWYVIPPLLMGCNCNNGLQFSTALYKISLGFNSILAFSSGVEAKWY 383
N F + PG WY PP C+ NG+Q + ++ G + +F + +WY
Sbjct: 326 NKSSFRTLSPGEWYTEPP-SGPCHRGNGIQ-NLLQDPVTGGMVNRTSFRTLSPGEWY 380
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 553 NNDLFSVIGPGTWYVIPPLLMGCNCNNGLQ 464
N F + PG WY PP C+ NG+Q
Sbjct: 490 NRSSFRTLSPGEWYTEPP-SGPCHRGNGIQ 518
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 553 NNDLFSVIGPGTWYVIPPLLMGCNCNNGLQ 464
N F + PG WY PP C+ NG+Q
Sbjct: 367 NRTSFRTLSPGEWYTEPP-SGPCHRGNGIQ 395
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +3
Query: 279 VNKVINHVMEKGNKRLARQLVEKAFENIKRKQIERYHLASTPEEKAKIELNPKDILYKAV 458
+N+++NH E +K++ KA + +K + TPEE++K ++ P +
Sbjct: 565 INRIMNH-REGYDKKI------KAKKGKNKKSKKTLPTGDTPEEESKPDIEPAQPIPTPQ 617
Query: 459 ENCKPLLQLQP 491
NCK + QP
Sbjct: 618 VNCKERYEKQP 628
>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
Length = 1716
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +3
Query: 192 ADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGNKRLARQLVEKAFENIKRK 371
A SDL+ RAT ++ + S++ +P N V H L++ +
Sbjct: 178 ATSDLQKRATELLEKSETTLDSTISTEPFPNLVKPH------------LIQAPLKQTSVS 225
Query: 372 QIERYHLASTPEEKAKIELNPK-DILYK 452
Q E + A P K K ++NP+ DILY+
Sbjct: 226 QPETHIAAPNPSYKQKRDINPENDILYQ 253
>SB_43252| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 699
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/39 (51%), Positives = 24/39 (61%)
Frame = +3
Query: 264 YFDPLVNKVINHVMEKGNKRLARQLVEKAFENIKRKQIE 380
YFDPL KV++ M N LARQ ++A E IKR Q E
Sbjct: 503 YFDPLKTKVVHFSMNPSN--LARQ--QRA-EEIKRLQDE 536
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 339 VEKAFENIKRKQIERYHLASTPEEKAKI 422
+++AFE ++ + + + +A T EEKAKI
Sbjct: 22 LQEAFEKFRKSRQKEFKIAKTMEEKAKI 49
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 28.3 bits (60), Expect = 6.3
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = +3
Query: 195 DSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGNKRLARQLVEKAFENIKRKQ 374
D + A+ + T E D K ++ + +RL QL E N+K +
Sbjct: 1872 DDESDEPASEEAEEKTKEEKLKSMLDSSKLKTEAKILREETERLKAQLEETM--NLKEEL 1929
Query: 375 IERYHLAS-------TPEEKAKIELNPKDI 443
++ H A T EEKAKIE KDI
Sbjct: 1930 QDKLHTAEHELFEARTSEEKAKIEHRDKDI 1959
>SB_28538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 3 IKKK*KTMSNVLIFFYRRLKNSSFNSLTRTLSKLQIRNYAKATSFP 140
IKK+ KT++N+LIF N + LT TL ++ Y + S+P
Sbjct: 47 IKKRLKTLTNILIF------NLAVAELTNTLCLPLVQTYLELKSWP 86
>SB_34658| Best HMM Match : SUI1 (HMM E-Value=1e-06)
Length = 798
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +3
Query: 171 EDQVKLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKG 314
ED VK++A + + P ++S+ P++N+++N + G
Sbjct: 537 EDDVKILAHKPISKSCNLDPLPTSLSKGCFSTLLPIINRIVNASLSSG 584
>SB_12951| Best HMM Match : Radial_spoke_3 (HMM E-Value=0)
Length = 374
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 264 YFDPLVNKVINHVMEKGNKRLARQLVEKAFENIKRKQIERYHLASTPEEKAKIE 425
++DP+ +I HV+ K RQ V + R +E+ +A E+K KIE
Sbjct: 278 FYDPVERAIIRHVVTK------RQQVYGKLDEELRLSMEKEIMARAAEQKKKIE 325
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,008,929
Number of Sequences: 59808
Number of extensions: 423343
Number of successful extensions: 1252
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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