Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10l07
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07696.1 68415.m00947 ribosomal protein S7 family protein con...    55   5e-08
At2g26320.1 68415.m03158 MADS-box protein (AGL33) contains Pfam ...    32   0.42 
At5g20640.1 68418.m02452 hypothetical protein contains Pfam prof...    30   1.3  
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ...    30   1.3  
At4g23020.1 68417.m03320 expressed protein  ; expression support...    30   1.7  
At5g06970.1 68418.m00789 expressed protein                             29   2.2  
At3g20250.1 68416.m02565 pumilio/Puf RNA-binding domain-containi...    29   2.2  
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil...    29   3.9  
At5g65460.1 68418.m08232 kinesin motor protein-related contains ...    28   5.1  
At4g19450.1 68417.m02861 nodulin-related weak similarity to nodu...    28   5.1  
At4g18700.1 68417.m02765 CBL-interacting protein kinase 12 (CIPK...    28   5.1  
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ...    28   6.8  
At3g48640.1 68416.m05310 expressed protein                             28   6.8  
At3g20020.1 68416.m02533 protein arginine N-methyltransferase fa...    27   9.0  
At1g22180.2 68414.m02774 SEC14 cytosolic factor family protein /...    27   9.0  

>At2g07696.1 68415.m00947 ribosomal protein S7 family protein
           contains Pfam profile PF00177: Ribosomal protein S7p/S5e
          Length = 148

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
 Frame = +3

Query: 318 KRLARQLVEKAFENIKRKQIERYHLASTPEEKAKIELNPKDILYKAVENCKPLLQLQPIK 497
           K L ++LV    +  KR ++ R  +  T    A+ E +   ++  AVEN KP+ ++  + 
Sbjct: 9   KLLIKKLVNFRMKEGKRTRV-RAIVYQTFHRPARTERDVIKLMVDAVENIKPICEVAKVG 67

Query: 498 RGGITYQVPGPITEKRSLFLAIKWLLETTDEKERTVHFP-EQFAW-ELLEASNNTGKVVK 671
             G  Y VPG +   R   LAI+W+LE   ++  +     E+ ++ E+L+A    G   +
Sbjct: 68  VAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQKRGSARR 127

Query: 672 RNQDLH 689
           + ++LH
Sbjct: 128 KRENLH 133


>At2g26320.1 68415.m03158 MADS-box protein (AGL33) contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain)
          Length = 109

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 159 IFRKEDQVKLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNK 287
           +F+K ++V L+ DSD+      P + PTV  T S  F  ++ +
Sbjct: 44  LFKKAEEVALLCDSDIMLIVVSPTEKPTVFNTRSRSFHTILER 86


>At5g20640.1 68418.m02452 hypothetical protein contains Pfam profile
           PF04525: Protein of unknown function (DUF567)
          Length = 215

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +3

Query: 186 LIADSDLKNRATVPVKPPTVSETSSVYFD---PLVNKVINHVMEKGNKRLARQLVEKAFE 356
           L+ +S +K    V  KPP +S T + Y +       +  N +M+   K +A+  +EK  E
Sbjct: 119 LVQNSSIK--ILVHGKPPKISSTRNNYVEIKGSFAERACN-IMDSDGKAIAKVRIEKEME 175

Query: 357 NIKRKQIERYHLASTP 404
            +   + + YH+   P
Sbjct: 176 EMVGNKKDLYHVIVKP 191


>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 979

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
 Frame = +3

Query: 51  RRLKNSSFNSLTRTLSKLQIRNYAKATSFPDYYQNPIFRKEDQVKLIADSDLKNRATV-- 224
           R+ K S  N    T+   Q+  Y       DY+++   R+E+ V+   DS  K +  +  
Sbjct: 39  RKRKESLENVKEETVGAAQLLGYDLVEKASDYHESKNLRREEHVE---DSSRKEKEAISR 95

Query: 225 --------PVKPPTVSETSSVYFDPLVNKVIN-HVMEKGNKRLARQLVEKAFENIKRKQI 377
                   P+K   V   + +    LV KV++ H  EKG  R  +   E+   +  RK+ 
Sbjct: 96  CREEKIEKPMKEDPVG-AAQLPDKNLVEKVLDCHESEKGYDRSEKLSHEELVMDSSRKKE 154

Query: 378 ERYHLASTPEEK 413
           E   ++S+ EEK
Sbjct: 155 EA--ISSSREEK 164


>At4g23020.1 68417.m03320 expressed protein  ; expression supported
           by MPSS
          Length = 439

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
 Frame = +3

Query: 141 DYYQNPIFRKEDQVKLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGNK 320
           DY  + I  +EDQ ++ A     NR    VK   + E + +    +V+ V+    ++ N 
Sbjct: 306 DYKSHIIEIEEDQSEIRA-----NRLFALVKSRIIEEQNQLLASHVVDNVLLDFFKENNN 360

Query: 321 RLAR---QLVEKAFENIKRKQIERYHLASTPEEKAKIELNPKDILYKAVENCKPLLQLQP 491
              R   +LVE   E + R+Q + Y++  + +   K E+  K++ +  +   +    ++ 
Sbjct: 361 NETRDEDKLVEIVEEWVMRRQDDEYNMFMSWKVSEKREIYVKEMKWGCINGDEKEYVVEE 420

Query: 492 IKRGGIT 512
           +  G +T
Sbjct: 421 LGNGFLT 427


>At5g06970.1 68418.m00789 expressed protein
          Length = 1101

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 349  HSKISKGNKLNDTIWLLHQKKKPK*S*ILRIFYIKPLKIANHCYNYSPSR 498
            H  +S+ +KL D++WL    KKP+   ++R   ++  K  N   ++  SR
Sbjct: 854  HYAVSQLSKLEDSMWLRWIAKKPREKIVIRKSMVEKSKSFNQKESFEGSR 903


>At3g20250.1 68416.m02565 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806 Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain) (8 copies at C-terminus)
          Length = 961

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 270 DPLVNKVINHVMEKGNKRLARQLVEKAFENIKRKQIERYHLASTPEEK 413
           D   N V  HV+E+G     RQ++EK   N+   Q+ ++  AS   EK
Sbjct: 820 DQYGNYVTQHVLERGKPDERRQIIEKLTGNV--VQMSQHKYASNVVEK 865


>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
           to U2 small nuclear ribonucleoprotein auxiliary factor
           35 kD subunit related protein 1 (sp|Q15695)
          Length = 757

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 324 LARQLVEKAFENIKRKQIERYHLASTPEEKAKIELN 431
           ++R+   KA + +KRKQ+ R  +A+   E+AK +LN
Sbjct: 33  MSRKEKRKAMKKLKRKQV-RKEIAAKEREEAKAKLN 67


>At5g65460.1 68418.m08232 kinesin motor protein-related contains
           similarity to kinesin heavy chain
          Length = 1281

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
 Frame = +3

Query: 150 QNPIFRKEDQVKLIADSDLKNRATVPVKP-PTVSETSSVYFDPLVNKVINHVMEKGNKRL 326
           Q+ +   E Q+     SD+  R+  P++P P  +E +       V K +   ++K +  +
Sbjct: 592 QSKVKDLESQLSKALKSDM-TRSRDPLEPQPRAAENT--LDSSAVTKKLEEELKKRDALI 648

Query: 327 AR--QLVEKAFENIKRKQIERYHLASTPEEKAKIELNPKDI 443
            R  +  EK F+ +  K +      S+P  KA   + P D+
Sbjct: 649 ERLHEENEKLFDRLTEKSVASSTQVSSPSSKASPTVQPADV 689


>At4g19450.1 68417.m02861 nodulin-related weak similarity to
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 572

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -1

Query: 472 GLQFSTALYKISLGFNSIL--AFSSGVEAKWYRSICFLLIFSNAFSTS*RANRLLPFSIT 299
           G+Q+    + ISL +  +      +G+   W+ ++CF+L  SN       ANR L  S+T
Sbjct: 87  GVQWLVITHFISLPYIMVFLCCLLAGLSICWFNTVCFVLCISNF-----PANRSLALSLT 141


>At4g18700.1 68417.m02765 CBL-interacting protein kinase 12 (CIPK12)
           identical to CBL-interacting protein kinase 12
           [Arabidopsis thaliana] gi|13249123|gb|AAK16687; contains
           Pfam profiles PF00069: Protein kinase domain and
           PF03822: NAF domain; identical to cDNA CBL-interacting
           protein kinase 12 (CIPK12) GI:13249122
          Length = 489

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 81  LTRTLSKLQIRNYAKATSFPDYYQNPIFRKE-DQVKLIADSD 203
           LTR LSKL   N  K  +FP+  +N  F+K    +K   + D
Sbjct: 253 LTRLLSKLLETNPEKRFTFPEIMENSWFKKGFKHIKFYVEDD 294


>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
           XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 1012

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 33  VLIFFYRRLKNSSFNSLTRTLSKLQIRNYAKATSFPDYYQNPIFRKEDQVK 185
           +L+  Y+    S+   LT + SKL +RN  +       Y+N IF+K  QV+
Sbjct: 363 LLMSVYKNKFRSAKKYLTDS-SKLNLRNVERFIKAVGMYENQIFQKRAQVQ 412


>At3g48640.1 68416.m05310 expressed protein 
          Length = 224

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
 Frame = +3

Query: 69  SFNSLTRTLSKLQIRNYAKATSFPD---YYQNPIFRKEDQVKLIADSDLKNRATVPVKPP 239
           S+N   ++++ L + N  K  +  +   Y +  + +   QV +  D    N   V  K  
Sbjct: 33  SWNEGLKSIANLYLENTTKTLNLFEKFMYTEEVVTQYVCQVNVYWDHVTTNWDHVTTKTR 92

Query: 240 TVSETSSVYFDPLVNKVIN----HVMEKGNKRLARQLVEKAFENIKRKQIERY 386
            +SE   +Y D    +  +    HVM  G  R    ++EK +++ KRK+I ++
Sbjct: 93  KLSE-KFMYTDEFATQYESVYRDHVMLLGKIRELEVVLEKKYKHAKRKRIMKF 144


>At3g20020.1 68416.m02533 protein arginine N-methyltransferase
           family protein similar to SP|Q96LA8 Protein arginine
           N-methyltransferase 6 (EC 2.1.1.-) {Homo sapiens}
          Length = 435

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +3

Query: 174 DQVKLIADSDLKNRATVPVKPPTVSETSSVYFDPLVNKVINHVMEKGNKRLARQLVEKAF 353
           +Q K    SD    +T P  PPT  + + VYF   ++   + V+E G+  L++    K F
Sbjct: 356 NQKKRTNPSDALVLSTSPESPPTHWQQTIVYFYDPIDVEQDQVIE-GSVTLSQSKENKRF 414

Query: 354 ENI 362
            NI
Sbjct: 415 MNI 417


>At1g22180.2 68414.m02774 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           profile: PF00650 CRAL/TRIO domain; similar to
           polyphosphoinositide binding protein Ssh1p (GI:|2739044)
           {Glycine max}; similar to Phosphatidylinositol Transfer
           Protein Sec14p (GI:2780955) [Saccharomyces cerevisiae]
          Length = 314

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 558 AIKWLLETTDEKERTVHFPEQFAWELLEASNNTGKVVKRN 677
           A K L ET   K R  + PE+  WE +     TGK+ + N
Sbjct: 63  ATKMLKETL--KWRAQYKPEEIRWEEIAREAETGKIYRAN 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,130,253
Number of Sequences: 28952
Number of extensions: 314991
Number of successful extensions: 920
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)