Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10l06
         (352 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    27   0.056
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    27   0.056
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   3.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   3.7  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          20   6.4  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           20   6.4  

>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 27.1 bits (57), Expect = 0.056
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 229 DVYRSQNHVVLQVKHIPIPIKRHLKDNYLPYYYTCYFIKKK 351
           D Y   N V+ Q  + P+PI   +  N L Y +  Y +  K
Sbjct: 256 DAYAVLNSVLFQNVYKPLPIVLSIVKNCLSYCFNLYHLASK 296


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 27.1 bits (57), Expect = 0.056
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 229 DVYRSQNHVVLQVKHIPIPIKRHLKDNYLPYYYTCYFIKKK 351
           D Y   N V+ Q  + P+PI   +  N L Y +  Y +  K
Sbjct: 256 DAYAVLNSVLFQNVYKPLPIVLSIVKNCLSYCFNLYHLASK 296


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 247 FETGRHHNIFS 215
           F +G+H+NIF+
Sbjct: 44  FSSGKHYNIFA 54


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 247 FETGRHHNIFS 215
           F +G+H+NIF+
Sbjct: 44  FSSGKHYNIFA 54


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 240 VSKPRSSPSE 269
           VS PRSSP+E
Sbjct: 151 VSTPRSSPAE 160


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 240 VSKPRSSPSE 269
           VS PRSSP+E
Sbjct: 142 VSTPRSSPAE 151


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,812
Number of Sequences: 336
Number of extensions: 1389
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6981810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)