Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10l06
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    28   0.49 
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        27   0.85 
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   2.6  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   3.4  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   3.4  
SPAC24H6.02c |||TIM23 translocase complex subunit Tim15|Schizosa...    25   3.4  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    24   6.0  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    24   6.0  
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    24   7.9  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    24   7.9  

>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 0.49
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 276 YVLHLENYVVLRPVDITTYSAYEKSS*FIITNSYFIIR 163
           +V++ EN+  L   D    ++ EKS  FII N +  IR
Sbjct: 296 FVVNAENHFTLSATDFLRNASTEKSHIFIIVNKFDNIR 333


>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 226 CDVYRSQNHVVLQVKHIPIPI 288
           C ++ S +H V+Q KH P P+
Sbjct: 5   CSIFLSCSHRVIQAKHPPFPL 25


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 279 GYVLHLENYVVLRPVDITTYSAYEKS 202
           GY+ H+E+  V R   +  Y  YE S
Sbjct: 346 GYIRHIEHLQVFRQAMVNYYRLYEDS 371


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 301 LSAFLLVWVCASLGELRGFETGRH 230
           +S +LL W+ A L  +  F  G+H
Sbjct: 202 MSTYLLAWIVAELEYVEYFTPGKH 225


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 244 ETGRHHNIFSLREEFVIYHNELILYH-QNLILLR 146
           +TG  H + +L +EF      L  YH +NLIL+R
Sbjct: 234 QTGSSHVLINLAQEFDELAKTLPPYHRKNLILVR 267


>SPAC24H6.02c |||TIM23 translocase complex subunit
           Tim15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 23  RNSERYTKKRIENFKVLVKCSKC 91
           R++  ++K+   N  VLV+C KC
Sbjct: 88  RSNHNFSKQAYHNGTVLVQCPKC 110


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 235 YRSQNHVVLQVKHIPIPIKRHLKDNY 312
           Y++ +  ++   HIP+ + +HL  NY
Sbjct: 488 YKNYSARLIHEYHIPLRLAKHLSHNY 513


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -1

Query: 310 NYLLSAFLLVWVCASLGELRGFETGRHHNIFSLREEFVIYHNELILYHQN 161
           NY  S   ++WV  SL +LR  E  R+     L EE +++ + L+L +++
Sbjct: 79  NYFESTEAIIWVVDSLDDLR-LEECRNTLQELLVEEKLLFTSILVLANKS 127


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 60  ILKCS*NVLSANTVLTFNSIEFYSTRTPVRNSI 158
           +L+CS  V  A   L  NS + Y T+ P+  +I
Sbjct: 6   LLRCSRAVSLARPDLPRNSPDVYDTKIPILQAI 38


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 109 KVNTVLALRTFHEHFKIFNSLLRVPFAVSLRVVPI 5
           KVNT  A+ T     KIF+    + F V L + P+
Sbjct: 241 KVNTDCAILTSSGKLKIFSKAQNIVFDVLLALEPM 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,263,072
Number of Sequences: 5004
Number of extensions: 22606
Number of successful extensions: 57
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)